Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43270 233 / 3e-72 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27370 191 / 3e-56 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G27360 182 / 5e-53 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G02065 127 / 4e-33 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 128 / 8e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G57920 127 / 8e-33 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT2G42200 127 / 1e-32 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G60030 123 / 8e-30 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 121 / 3e-29 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT2G33810 109 / 1e-28 SBP SPL3 squamosa promoter binding protein-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172600 [exp] 649 / 0 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 270 / 6e-86 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.016G048500 [exp] 145 / 2e-39 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.002G142400 [exp] 135 / 2e-35 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.014G057800 [exp] 131 / 1e-33 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.014G057700 [exp] 128 / 2e-33 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.003G169400 [exp] 127 / 2e-33 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.002G142200 [exp] 125 / 2e-32 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.001G058600 [exp] 124 / 1e-31 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011356 [exp] 225 / 3e-69 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10006411 [exp] 223 / 3e-68 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021614 [exp] 194 / 6e-57 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 143 / 2e-38 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 134 / 5e-35 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 130 / 4e-34 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 130 / 5e-33 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10040595 [exp] 126 / 4e-32 AT5G43270 135 / 9e-36 squamosa promoter binding protein-like 2 (.1.2.3) Lus10028181 [exp] 123 / 3e-31 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10018610 [exp] 117 / 2e-30 AT3G15270 127 / 7e-37 squamosa promoter binding protein-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.001G055900.6 pacid=42792411 polypeptide=Potri.001G055900.6.p locus=Potri.001G055900 ID=Potri.001G055900.6.v4.1 annot-version=v4.1 ATGGAGTGGAATGGCAAACCCCACTTACAGTGGGACTGGGAGAGCCTGATAATGTTCAATGGAATAACAACTGAAAATTCTAAGCAGTTAAGCCCAACAG ATTTGGAAACTGATGGAGAAAAAGGAACCGACTCTGGGTTTTTCTATTCATCTGGGAGTGCAAGCAGAAGCGGTGGTTCTAGCTCTGATTTGGAACTTGC TTCTTTCTCAAAGTGCTCGAAGTCAGCTTCCATCAATTCTTCATCAGCTGGGGAAGTTAAAACATCCAAATTCACTTTGGAGGCCTCTAAAGCAAATCCA TCTGATTACAATAAGAAAGAAATTGGAAAGGCTAAGACAGCTAGTATGTCTTCCACAATTGAGGCTGCAGGTGGTTCAGGTGACCAGCTGCTTGGTTTGA AGCTTGGTAAACGAATATACTTTGAAGATGCTTGTGCTGGCAACAATGTTCAGTCGTCATCATTTTCTACAGTTCCTGTGCCCTCTTTTACTTCAGCAAA GAAATTGAAGTCCACTATTCAGAGTCAGCGTGCTCCATGCTGTCAAGTGGAAGGCTGTAACCTTGACCTCTCATCAGCTAAAGATTATCATCGCAAACAT AGAGTTTGTGAAAGCCATTCAAAGTGCCAGAAGGTCATTGTAGCTGGTTTGGAACGCAGGTTTTGCCAGCAGTGTAGCAGGTTCCATGGCCTGTCAGAGT TCGATGAAAAGAAGAAAAGCTGTCGCAGGCGACTTTCTGATCACAATGCAAGACGCCGCAAACAACCAGGATCGGTCCATTTAAATTCAAGAGTGTCTTC ATCATTATATGATGAAAGGCAACAGATGAGTCTTGCTTGGGACAGGGCACCACTTGTTCATGCCAGGCCTAATGCAAATTTGACGTGGGAAGGCACATAC ATCTCCAAGTTCACAATAACAAAAGATTATATAGCAAAGCCTGCAGAAATAGGTGGTAATGATGGGCAGTTTCACTTGCCTGGCTTTGATCTGACAAATG GCATTGATATTCAGCACCATCATAAGTCTAATAGCTCCTTACCATCTAAAGGTAAGGGCACTGCAGCTGAGATTCTCAACCAAGGTTTGGAAGAATACAT CATTCCTTCCAAAGCGGAAGCAGCACCAGAATCTCATCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCACGTGAGCCGCAATCTATTTCATTT GAACAACCCGTGCATACAAATCACACCACTCAGTCTGTGCTGCAAGTTATACCCCAAAACTCACCACTTGCTTCATCAGAGTATTGGAGGACTGAGCAAC CGTCAACTGACTCTCAAGTGCATACCTTGACGTCTCACTGA
AA sequence Show only first row Show all	>Potri.001G055900.6 pacid=42792411 polypeptide=Potri.001G055900.6.p locus=Potri.001G055900 ID=Potri.001G055900.6.v4.1 annot-version=v4.1 MEWNGKPHLQWDWESLIMFNGITTENSKQLSPTDLETDGEKGTDSGFFYSSGSASRSGGSSSDLELASFSKCSKSASINSSSAGEVKTSKFTLEASKANP SDYNKKEIGKAKTASMSSTIEAAGGSGDQLLGLKLGKRIYFEDACAGNNVQSSSFSTVPVPSFTSAKKLKSTIQSQRAPCCQVEGCNLDLSSAKDYHRKH RVCESHSKCQKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQPGSVHLNSRVSSSLYDERQQMSLAWDRAPLVHARPNANLTWEGTY ISKFTITKDYIAKPAEIGGNDGQFHLPGFDLTNGIDIQHHHKSNSSLPSKGKGTAAEILNQGLEEYIIPSKAEAAPESHRALSLLSNNSWGSREPQSISF EQPVHTNHTTQSVLQVIPQNSPLASSEYWRTEQPSTDSQVHTLTSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.001G055900 [exp]	0	1
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	1.73	0.9065
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	2.00	0.8838	Pt-KICP.1
AT4G38050			Xanthine/uracil permease famil...		Potri.007G011400 [exp]	9.64	0.8745
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	15.09	0.8740
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	16.73	0.8619
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060300 [exp]	19.07	0.8639
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.008G092900 [exp]	19.20	0.8619
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	21.33	0.8224
					Potri.008G089401 [exp]	21.63	0.8670
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Potri.006G199600 [exp]	24.81	0.8573

Compare expression of checked genes

Potri.001G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.