Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 50 / 2e-06 zinc finger (Ran-binding) family protein (.1) AT2G17975 45 / 2e-05 zinc finger (Ran-binding) family protein (.1) AT1G50300 45 / 3e-05 TAF15 TBP-associated factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172500 [exp] 429 / 4e-152 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.013G022300 [exp] 48 / 4e-06 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.005G033000 [exp] 46 / 2e-05 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 45 / 2e-05 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.008G085400 [exp] 45 / 2e-05 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.012G046500 [exp] 44 / 8e-05 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.010G170700 [exp] 43 / 0.0002 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.015G038200 [exp] 41 / 0.0006 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006412 [exp] 362 / 1e-125 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10011357 [exp] 355 / 1e-120 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 267 / 5e-89 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015776 [exp] 224 / 5e-73 AT1G67325 192 / 8e-61 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015180 [exp] 52 / 3e-07 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 43 / 0.0001 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10012902 [exp] 43 / 0.0002 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10043289 [exp] 42 / 0.0003 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10030555 [exp] 42 / 0.0003 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10032790 [exp] 42 / 0.0004 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.001G056000.3 pacid=42791933 polypeptide=Potri.001G056000.3.p locus=Potri.001G056000 ID=Potri.001G056000.3.v4.1 annot-version=v4.1 ATGTCTCAGGTGGATAACAGAAATTCATCAGCAGCGAAGCGCGCAAGAACTGATGGTAGTCGCAGGGAGGATGATTGGACTTGTCCAAGCTGTGGCAATG TCAATTTTTCATTTAGGACTACTTGTAACATGCGTAATTGTACCCAACCTAGGCCAGCTGATCATATTTCGAAATCTGCTGCCAAGCCCCTGCAAGCACC ACAGGGTTATTCATCAGCTCCTTATTTAGGTTCTGGTGCACCTTCTTCAATGTATATGGGTGTGCCACCATATGGTTCTTCTCTCTTCAACGGGTCATCT ATTCCTCCATACGACGTTCCATTCACTGGGGGCTCGGCTTATCATTACAATTATGGCAGCCGCCTTTCTGGTGGCAGTCCATACAGACCGTTGCATATTT CAGGACCACCTCCTTATTCTGGTGGATCTATGATGGGAAATGGTGGGATGTATGCAATGCCCCCCCTAATGGACCGGTATGGATTAGGTATGCCAATGGG CCCTGCAGCTATGGGGCCAAGGCCAGGTTTTTTCCCAGATGATATATCTCAGAAGAAGGGTTCAGATGCATCACGTGATAATGACTGGACATGCCCGAAA TGTGGGAACATCAACTTTTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACTCCAAAGCCAGGGTCCCAGGTTGCAAAGTCTGACAAAAATTCCA AACAAAAAATGCCGGAGGGAAGCTGGAAGTGTGAAAAATGCAACAACATAAACTATCCATTCCGGACAAAGTGCAATAGACAAAATTGTGGGGCTGAGAA ACCAGCTGAGTCAAAGAAGTCCCCTTCGCCGGCACCTGATGAGGATGATCAGATAAGAGAGATTCAAATCTTATAA
AA sequence Show only first row Show all	>Potri.001G056000.3 pacid=42791933 polypeptide=Potri.001G056000.3.p locus=Potri.001G056000 ID=Potri.001G056000.3.v4.1 annot-version=v4.1 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHISKSAAKPLQAPQGYSSAPYLGSGAPSSMYMGVPPYGSSLFNGSS IPPYDVPFTGGSAYHYNYGSRLSGGSPYRPLHISGPPPYSGGSMMGNGGMYAMPPLMDRYGLGMPMGPAAMGPRPGFFPDDISQKKGSDASRDNDWTCPK CGNINFSFRTVCNMRKCNTPKPGSQVAKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGAEKPAESKKSPSPAPDEDDQIREIQIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.001G056000 [exp]	0	1
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.006G263200 [exp]	22.04	0.6250
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.009G020900 [exp]	23.66	0.6278
AT4G27130			Translation initiation factor ...		Potri.007G122600 [exp]	28.84	0.5999
AT1G24050			RNA-processing, Lsm domain (.1...		Potri.008G146200 [exp]	30.04	0.6235
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.004G106300 [exp]	46.79	0.5787
AT1G16916			unknown protein		Potri.011G109100 [exp]	49.95	0.5600
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.006G266800 [exp]	50.64	0.6218
AT1G50000			methyltransferases (.1.2)		Potri.001G290100 [exp]	54.19	0.6132
AT4G25225			unknown protein		Potri.001G124100 [exp]	56.18	0.5689
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.016G093944 [exp]	80.62	0.5809

Compare expression of checked genes

Potri.001G056000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.