Plant FIBer expression Database

Potri.001G056500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27385 187 / 3e-60 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G172000
[exp]
301 / 7e-105 AT1G27385 204 / 9e-67 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037024
[exp]
249 / 1e-84 AT1G27385 250 / 3e-85 unknown protein
Lus10015781
[exp]
177 / 3e-53 AT1G27385 168 / 1e-49 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0070 ACT PF04359 DUF493 Protein of unknown function (DUF493)
Representative CDS sequence
>Potri.001G056500.1 pacid=42787712 polypeptide=Potri.001G056500.1.p locus=Potri.001G056500 ID=Potri.001G056500.1.v4.1 annot-version=v4.1
ATGGCGTGCACGAGTGTGCTGCGTTCTGTTTTGACAACAGATCCATGGATGATTCCTCTCCATCAAAACCGAGCCATCATCTATTATTCTCTCTCATCGA
GAAAAACCGTTGGAGTTTCAACCAGTAAGACACCAAGCATTAGGGCTCCTGAATTTCATCACTTTGGAAGACCAAGACCCACTCATGTTAATTGTTTCAG
CTCTTATAATAATAACAACAACAATGAAGATGACCAGGATCAAGACCCCCCTCAAGAAGCTGTTCTCAAAGCTATTTCTGAGGTATCAAGGACAGAAGGG
AGGGTTGGACAAACCACAAATGTGGTTATTGGTGGTACGGTAGCAGATGATTCTACTAATGAATGGCTTGCTTTGGATAAGAAGGTAAACTCATATCCAA
CAGTTAGAGGATTTACTGCAATAGGTACAGGAGGTGATGATTTTGTGCAAGCTATGGTTATTGCTGTTGAATCTGTAATTCAACAACCAATCCCTGAGGG
TCGAGTGAGGCAGAAAGTATCTTCAAGGGGCAAATATGTGTCGGTCAACATTGGTCCTGTTCAAGTTGTTTCTAGTGAGCAGGTTCAAGCTGTATACAAT
GCCATGAGGAGAGATGATCGGATGAAGTACTTTTTGTAG
AA sequence
>Potri.001G056500.1 pacid=42787712 polypeptide=Potri.001G056500.1.p locus=Potri.001G056500 ID=Potri.001G056500.1.v4.1 annot-version=v4.1
MACTSVLRSVLTTDPWMIPLHQNRAIIYYSLSSRKTVGVSTSKTPSIRAPEFHHFGRPRPTHVNCFSSYNNNNNNEDDQDQDPPQEAVLKAISEVSRTEG
RVGQTTNVVIGGTVADDSTNEWLALDKKVNSYPTVRGFTAIGTGGDDFVQAMVIAVESVIQQPIPEGRVRQKVSSRGKYVSVNIGPVQVVSSEQVQAVYN
AMRRDDRMKYFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27385 unknown protein Potri.001G056500
[exp]
0 1
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Potri.017G007300
[exp]
1.41 0.9834
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.014G102100
[exp]
2.44 0.9802
AT2G48120 PAC pale cress protein (PAC) (.1),... Potri.014G138500
[exp]
4.12 0.9674
AT3G62410 CP12-2 CP12 DOMAIN-CONTAINING PROTEIN... Potri.014G120700
[exp]
4.24 0.9755
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.001G389200
[exp]
4.47 0.9633
AT2G20920 Protein of unknown function (D... Potri.009G137600
[exp]
5.00 0.9739
AT1G33780 Protein of unknown function (D... Potri.013G100000
[exp]
5.09 0.9598
AT4G13670 PTAC5 plastid transcriptionally acti... Potri.001G049900
[exp]
5.29 0.9748
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Potri.010G117200
[exp]
5.47 0.9737 APG2.1
AT1G10500 ATCPISCA chloroplast-localized ISCA-lik... Potri.007G079600
[exp]
6.24 0.9709

Potri.001G056500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.