Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 402 / 7e-140 HCP-like superfamily protein with MYND-type zinc finger (.1) AT1G17110 44 / 0.0001 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 43 / 0.0003 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 42 / 0.0006 UBP16 ubiquitin-specific protease 16 (.1) AT2G24640 42 / 0.0006 UBP19 ubiquitin-specific protease 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171400 [exp] 704 / 0 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 467 / 5e-165 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 466 / 1e-164 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.013G008800 [exp] 62 / 8e-11 AT1G74875 110 / 2e-29 unknown protein Potri.001G378900 [exp] 44 / 0.0001 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G095200 [exp] 44 / 0.0002 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 43 / 0.0004 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 42 / 0.0007 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006418 [exp] 553 / 0 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10015784 [exp] 539 / 0 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 371 / 2e-127 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 312 / 7e-105 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10038709 [exp] 51 / 5e-07 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10037978 [exp] 49 / 2e-06 AT1G67623 82 / 3e-18 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0020 [poplar] [flax] TPR PF08238 [poplar] [flax] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Potri.001G056800.1 pacid=42792196 polypeptide=Potri.001G056800.1.p locus=Potri.001G056800 ID=Potri.001G056800.1.v4.1 annot-version=v4.1 ATGAGAACAAGGAGAGGGATTTCTTATCCTAGAAGAGGAGTAGCAGTAAACGCTTGTAATACTGCGGCGGAGAAGAGGACATCGTCAACTACTTATAATA GGGGGAAACCTGATTTTACCGCCGGAGAATATATGGTTTGCCGGAAAAGGAATCGATTAGTCTCGACGGGAAAAAAAGGAGAGACTGACTTGTTTGAATC TTTACCCGATGATCTTGTCATTTCTATCCTCTGCAAGCTTAGCTCTTCTGCTTCTTGCCCCTCCGATTTCATTAACGTTTTAATTACGTGCAGGAGATTA AATGGATTAGGCCTTCATTCACTAGTATTATCCAAAGCTTCTCCGAAATCATTTGCAATCAAAGCCAACAATTGGTCCGATTCTGCTCACCGTTTCCTCA AGCTCTGTGCCGATGCCGGAAATGCTGAAGCTTGTTACACTCTTGGCATGATTCGGTTTTACTGTTTACAAAACCGGGGGAGTGGCGCTTCTCTAATGGC AAAGGCGGCGATTAGCTCACACGCGCCTGCACTCTATTCACTTGCTGTTATACAATTCAATGGAAGCGGTGGTTCCAAAAGCGATAAAGACCTCCGAGCC GGCGTCGCGTTGTGTGCACGCGCTGCCTTTCTTGGTCACATCGACGCCCTGCGGGAGCTAGGCCACTGCCTGCAAGACGGTTATGGTGTCCGTCAAAACG TAACTGAGGGACGTCGTTTTCTCGTCCAAGCAAACGCGCGTGAACTCGCGGCTGTTTTGTCTAATCCTGATTCTGGACTGCCAACGCGCGCTTGGCTCAC GTGGAACCCACACGCACACCCTAACCATCGTCACCCTAGTGAGAATGGACCCAGTGGCTGTCCTTTGTTGAGTGACTTTGGGTGTAATGTTCCAGCTCCT GAGGCTCATCCGGCCAGTCGTTTTATGACGGAATGGTTTGCTATTCGGGGCGGGTCTGCTGGTTCGGGACTCCGTTTGTGTTCTCATACAGGTTGTGGGC GGCCCGAGACAAGAAAACACGAGTTTAGACGGTGTTCTGTTTGTGGAGCCGTTAACTATTGTTCACGCGCTTGTCAAGCACTTGACTGGAAGCTCAGACA TAAAGAGGAGTGCGCCCCTGTTGAGAGGTGGGTGGATGAGGATGGTGAAGGCGGGGACGACGCCGGTGGTGTTGGTGGAGGGGATGGCGATGATGTCATG GTTGAGAGCTAA
AA sequence Show only first row Show all	>Potri.001G056800.1 pacid=42792196 polypeptide=Potri.001G056800.1.p locus=Potri.001G056800 ID=Potri.001G056800.1.v4.1 annot-version=v4.1 MRTRRGISYPRRGVAVNACNTAAEKRTSSTTYNRGKPDFTAGEYMVCRKRNRLVSTGKKGETDLFESLPDDLVISILCKLSSSASCPSDFINVLITCRRL NGLGLHSLVLSKASPKSFAIKANNWSDSAHRFLKLCADAGNAEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKSDKDLRA GVALCARAAFLGHIDALRELGHCLQDGYGVRQNVTEGRRFLVQANARELAAVLSNPDSGLPTRAWLTWNPHAHPNHRHPSENGPSGCPLLSDFGCNVPAP EAHPASRFMTEWFAIRGGSAGSGLRLCSHTGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKLRHKEECAPVERWVDEDGEGGDDAGGVGGGDGDDVM VES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67340			HCP-like superfamily protein w...		Potri.001G056800 [exp]	0	1
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Potri.014G075800 [exp]	1.00	0.8417
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	8.12	0.8212
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050500 [exp]	8.48	0.8054
AT3G07720			Galactose oxidase/kelch repeat...		Potri.014G168300 [exp]	12.96	0.7374
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.014G001100 [exp]	18.49	0.7489
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	19.49	0.7863
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Potri.002G179300 [exp]	19.62	0.7751
AT5G63690			Nucleic acid-binding, OB-fold-...		Potri.014G083500 [exp]	22.97	0.7098
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.014G142600 [exp]	24.65	0.7017	MAX2.2
AT4G14740			Plant protein of unknown funct...		Potri.010G082400 [exp]	24.91	0.7357

Compare expression of checked genes

Potri.001G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.