Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PHK3,AHK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27320 1383 / 0 AHK3 histidine kinase 3 (.1) AT5G35750 1045 / 0 AHK2 histidine kinase 2 (.1) AT2G01830 968 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G10720 201 / 7e-53 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 162 / 2e-40 AHK1, ATHK1 histidine kinase 1 (.1) AT1G66340 158 / 1e-39 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 131 / 1e-30 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 122 / 2e-28 ERS1 ethylene response sensor 1 (.1) AT3G04580 68 / 3e-11 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 59 / 2e-08 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G171000 [exp] 1904 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 1089 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 998 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 993 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.005G111700 [exp] 162 / 3e-40 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.007G056400 [exp] 162 / 3e-40 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.018G011400 [exp] 153 / 2e-37 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.003G032300 [exp] 151 / 2e-37 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 142 / 1e-34 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015773 [exp] 1457 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10037032 [exp] 1163 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10012325 [exp] 1004 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 998 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10028992 [exp] 935 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 928 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10030772 [exp] 924 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 918 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10026917 [exp] 215 / 2e-57 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10041891 [exp] 167 / 1e-41 AT2G17820 1561 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [poplar] [flax] Cache PF03924 [poplar] [flax] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Potri.001G057400.4 pacid=42789998 polypeptide=Potri.001G057400.4.p locus=Potri.001G057400 ID=Potri.001G057400.4.v4.1 annot-version=v4.1 ATGAGTTTACTTCATGTATATGGGTTTGGTTTAAGGGTGCGGCATCTACTTTGGATGCTATGTTGCTGGATTGTATCGGTAATTTCCATGAACTGGTTCA TTAATGGTGGAGTTTTGGAGACCCAGGCTAGTTTGCTTGGTGATGGTGGCAAGATGTGGCTAAAATGCTTGGAGAAAGTTTCAGGGAATAGTTGCAAGAT CCATCATCACTACTACCAGTATATTGGTTCCAAGAGAATTAGCAAAACATGGTGGAGAAAGCTTTTGGTCGCATGGATAGTTGGTTGGATCACTGTCTCT GTATGGATCTTTTGGTACATGAGCTCACAAGCTTTTGAGAAGAGGAAAGAAACTCTTACAAGTATGTGTGATGAGAGGGCAAGGATGCTACAGGATCAGT TTAATGTGAGCATGAACCATGTGCAGGCCATGTCCATTTTGATCTCAACTTTTCACCATGCCAAAAACCCTTCTGCGATTGATCAGAGGACTTTTGCGAG GTATACAGAAAGAACCGCTTTTGAGAGGCCCCTCACAAGTGGTGTGGCCTATGCTGTAAGGGTGCTCCACTCTGAAAGGGAACAATTTGAGAAGCAACAA GGCTGGACTATTAAGAGGATGGATTCCTTTGAACAAAACCCAGTCCATAAGGATGACAATGCCCCTAAAGCATTGGAGCCATCCCCAATTCAGGAAGAAT ATGCTCCTGTCATCTTTGCACAGGATACTGTTGCACATGTGGTTTCCCTTGATATGCTGTCAGGAACTGAAGATCGTGAAAATGTGTTGCGTGCTAGAGC ATCTGGAAAGGGGGTTCTAACTGCTCCTTTCAGGTTACTCAAAACTAAACGTCTTGGGGTTATTTTGACATTTGCTGTGTACAAGACAGACCTCCCATCT AATGCAACTCCAAATGAGAGGATTCAAGCAACTGATGGGTACCTTGGAGGAATCTTTGACATCGAGTCACTCGTTGAGAAGCTACTTCAACAGCTTGCAA GCAAGCAGACTATCCTAGTGAATGTGTATGACACTACTAATCAGTCTTGCCCTATCAGCATGTATGGTTCAAATGTATCAGATGATGGGCTGGAACATGT CAGCGCCCTTAATTTGGAAGATCCTTTCAGAAAGCATGAGATGCGCTGCAGATTCAAACAAAAACCACCATGGCCATGGTTAGCAATAACAACATCAATT GGCATCCTTGTGATTGCATTGCTTATTGGGTACATATTCCATGCGACTATGAATCGGATTGCTAAAGTTGAAGATGATTGCCACAAGATGATGGAGCTTA CAAAACAAGCCGAGGCAGCTGATGTTGCAAAATCTCAGTTTCTTGCTACAGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGCTGCA TATGCTTATGGACACAGATCTAGATGCGAATCAGCAAGATTATGTTAGAACCGCACAAGACAGTGGAAAAGCTCTAGTCTCGCTTATAAATGAGGTTTTG GATCAAGCAAAGATTGAATCTGGTAAGATTGAGCTTGAGGAAATGCAGTTCGATTTGAGGGCAATAATGGATGATGTATTGGCACTCTTTTCTGGCAAGG CTCATGAGAAAGGGATTGAGTTGGCAGTTTACGTGTCTGATGGTGTTCCTGAAATGCTAATTGGTGATCCAGGGAGGTTTCGGCAAATTATTACCAATCT CATGGGGAATTCAATTAAATTTACAAAGAAAGGGCACATCTTTCTCACTGTTCATCCTGTTGAGGAGGTGATGGACTCGATAGATGTCGAGACAGAATCA TCATCACTAAACACCTTGAGTGGTTTGCCTGTTGCAGATAGACGCAGGAGTTGTGCAGGATTTAAGATTTTCAGTCGTGAGGGCTCAAGTCATACTCTCT CACCATCCTCTTCTGACCTTGTCAATCTAATAGTGTCAGTTGAGGATACAGGGGAAGGGATCCCTCTAGAAGCCCAACCTCGTGTTTTTACTCCTTTTAT GCAGGTTGATCCATCCATTTCCAGAAAATATGGAGGCACAGGCATTGGCCTGAGCATAAGCAAGTGTTTGGTTGGCCTTATGAATGGGGAAATTGGCTTC GCTAGCATACCAGATACTGGGTCCACCTTCACTTTCACTGCTGTATTTAGAAACGGCTGCTCCAATTCAAATGACTCCAAGCAGCAGAAGCAGAGAATAA AAAACCAATGTAACACAACGCCTTCAGAATTTCAAGACATGACTGCATTAGTTGTTGACCCCAAGCCTGTTAGGGCCAATGTTTCAAGATATCAGATCCA GCGGCTAGGAATACATGTTGAATTGGTTTCTGATTTAAATCAAGGTTTATCTATCATAAGCAATGAAAATAGAATTTTCAAAATGATCTTTGTTGAACAG GAAGTTTGGGAGAAGGACTCAAGCATTTCAGCTCACTTTGTCAATAACTTACAAAAAATTGAGAGAGGGGTTTCTTCCAAACTGTTCCTTTTGGGAAATT CTCTCAGTTCTTCCAGAACAAACACTGCAACTTCTGGTGCTTATACCCTAAGTGTCATAACCAAGCCCCTCAAGGCGAGTATGCTGGCTGCATCTTTACA ACGAGCAATGGGCGGGAATAAGGGGAATCCCCGCAATGGAGAACACCCCAGTTTGTCTCTTTGCAACCATCTTGTTGGAAGAAAAATTCTTATTGTAGAT GACAATAAAGTGAATCTCATAGTAGCTGCTGCTGCTTTGAAGAAGTATGGAGCTGAAGTTATCTGTGCAGATAGTGGCAAGATGGCGATCAAATTGCTCA AGCCACCTCACCAATTTGATGCGTGCTTCATGGATATCCAAATGCCAGAAATGGATGGGTATGTTATAGTTCATGCCTTAAAGATTTTAATGTTTGAAGC TACAAGGAGAATTCGGGATATGGAGTCAAATGGGCATATACCAATACTGGCAATGACTGCGGATGTGATCCAGGCTACATATGAGGAATGCCAAAGATGT GGAATGGATGGGTATGTTTCCAAGCCATTTGAAGCTGAACAGCTTTATCAGGAAGTTTCACGTTTTTTACAGCCAACGTCCAACGTGAATTTATAG
AA sequence Show only first row Show all	>Potri.001G057400.4 pacid=42789998 polypeptide=Potri.001G057400.4.p locus=Potri.001G057400 ID=Potri.001G057400.4.v4.1 annot-version=v4.1 MSLLHVYGFGLRVRHLLWMLCCWIVSVISMNWFINGGVLETQASLLGDGGKMWLKCLEKVSGNSCKIHHHYYQYIGSKRISKTWWRKLLVAWIVGWITVS VWIFWYMSSQAFEKRKETLTSMCDERARMLQDQFNVSMNHVQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQ GWTIKRMDSFEQNPVHKDDNAPKALEPSPIQEEYAPVIFAQDTVAHVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTKRLGVILTFAVYKTDLPS NATPNERIQATDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNQSCPISMYGSNVSDDGLEHVSALNLEDPFRKHEMRCRFKQKPPWPWLAITTSI GILVIALLIGYIFHATMNRIAKVEDDCHKMMELTKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDANQQDYVRTAQDSGKALVSLINEVL DQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIELAVYVSDGVPEMLIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHPVEEVMDSIDVETES SSLNTLSGLPVADRRRSCAGFKIFSREGSSHTLSPSSSDLVNLIVSVEDTGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGEIGF ASIPDTGSTFTFTAVFRNGCSNSNDSKQQKQRIKNQCNTTPSEFQDMTALVVDPKPVRANVSRYQIQRLGIHVELVSDLNQGLSIISNENRIFKMIFVEQ EVWEKDSSISAHFVNNLQKIERGVSSKLFLLGNSLSSSRTNTATSGAYTLSVITKPLKASMLAASLQRAMGGNKGNPRNGEHPSLSLCNHLVGRKILIVD DNKVNLIVAAAALKKYGAEVICADSGKMAIKLLKPPHQFDACFMDIQMPEMDGYVIVHALKILMFEATRRIRDMESNGHIPILAMTADVIQATYEECQRC GMDGYVSKPFEAEQLYQEVSRFLQPTSNVNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.001G057400 [exp]	0	1	PHK3,AHK3.1
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.003G171000 [exp]	1.00	0.8932	AHK3.2,PHK4
AT1G22540			Major facilitator superfamily ...		Potri.013G106500 [exp]	2.44	0.8521
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.018G027300 [exp]	4.47	0.8275
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	6.63	0.7923
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	9.32	0.8302
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	15.81	0.8125
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G205275 [exp]	18.00	0.8218
AT2G17440		PIRL5	plant intracellular ras group-...		Potri.003G090100 [exp]	19.44	0.8169
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140300 [exp]	19.62	0.8200
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.004G083300 [exp]	26.26	0.7873	Pt-SKOR.3

Compare expression of checked genes

Potri.001G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.