Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67310 832 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT2G22300 270 / 5e-76 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 229 / 8e-62 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 225 / 1e-60 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT3G16940 212 / 7e-57 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 166 / 1e-41 CAMTA calmodulin binding;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G170600 [exp] 1456 / 0 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G153100 [exp] 313 / 2e-91 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.005G075100 [exp] 304 / 2e-87 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 293 / 8e-84 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G141700 [exp] 246 / 4e-68 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 186 / 3e-48 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 90 / 1e-21 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.005G106300 [exp] 42 / 0.0003 AT3G51380 85 / 2e-22 IQ-domain 20 (.1) Potri.018G062001 [exp] 43 / 0.0006 AT2G26180 260 / 2e-85 IQ-domain 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011352 [exp] 616 / 0 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003119 [exp] 611 / 0 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10041704 [exp] 284 / 6e-81 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 268 / 2e-75 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 229 / 1e-61 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 229 / 2e-61 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036455 [exp] 189 / 4e-49 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 176 / 7e-45 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 176 / 8e-45 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 126 / 2e-29 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0159 [poplar] [flax] E-set PF01833 [poplar] [flax] TIG IPT/TIG domain CL0159 [poplar] [flax] PF03859 [poplar] [flax] CG-1 CG-1 domain CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.001G057800.1 pacid=42793101 polypeptide=Potri.001G057800.1.p locus=Potri.001G057800 ID=Potri.001G057800.1.v4.1 annot-version=v4.1 ATGCTGCAATCAGGGTATGATATCAATAGTCTGTTTGAAGAAGCACAAACGCGGTGGCTGAAACCAGCAGAAGTGATTTTTATTTTACAGAATCATGATA AGTATCAGTTCACAGAGAAACCACCTCAAAAGCCAACCAGTGGGTCTTTGTTTCTATTTAATAAGAGGGTTCTTAAGTTCTTTAGAAGAGATGGTCATAA TTGGCGTAAAAAGAAGGATGGAAGAAGTGTTGGAGAAGCACATGAAAGGCTTAAGGTTGGAAACGTTGAGGCTTTAAATTGTTATTATGCTCATGGCGAG CAAAACCAAAATTTTCAGAGACGCAGCTATTGGATGCTGGACCAGGCATTTGAGCACATCGTGCTTGTCCATTATAGAGACATCACTGAGGGAAAACCGT CTCCTGGATCTGCTGCACAGCTATCACCCATATTCTCTTATAGTCCTGGCACTAATACTAGTCAGACTCAAGGATCTACCTCTGCAATTAGTAGTGTATA TGAACCATACCAGAGTTTTTCCAGTCCAGCATCTGTAGATGTTAGCTCTGGATTAGGTATCAAGGACAATGAGGTGGGTAGGACAGCAGAGTTTACTAGT TCTGCTAATAAGGAGGTTACTCAATTTTTCCGAAGGCTGGAGGAGCAGTTGAGTTTGAATGAGGACAGCGCTGAAGAAATTGGCCCATTTGGTGCTGAAG AGGGAGCCATAAATGATACAAAAATTCTGGAATATGTAAATAACATCTCCAAAGAGGATCAATCTAAGAATTTACTTCATGGATCACTGTATATTGTTGA TTATCAATCTTATGGTGGACTTGCTGGAAATCAACTAGAGAGAAACAATCTTGCACCTCTTCAGGATGCAGGTGATAGTGGCGCTTACCAGCAACCATAT TCACATTATTATACAGATGGAAGTGAAGAACCCCTTCCCTGGAATGAAGGGATTGAGTCCTATAAGACTTCATCAGGCATTGAGTACCAGGAAAAGACCA AGTCCTCTTTAAGTACAGAACCAGCTCAAGAGCAAGAAAACTCTTATTGGATAAATTTCAATGAACCCAATGTCAGAAACTCTTCTTTGTTGCTGCCTCA AGAAGTTGAAAATTTTGAACTCCCTGCATATTCTTCTGTGATAGAAACACATGAAAACAATTCCAACTTCTATGCAATGCTATATGACCAAGACCATCTT GGAATACCCAATGAAGCAGATTCAAATTTGACAGTTGCACAGCAGCAGAAGTTTACTATCCATGAAATATCCCCAGAATGGGGTTATGCCACTGAGGCTA CAAAGGTCATCATTGTTGGATCGTTTCTCTGTGACCCATCGGAGTCTTCATGGATGTGCATGTTCGGTGACATTGAGGTTCCTCTTCAAATCATTCAAGA AGGTGTCATTCGTTGTGAGTGTCCTCCCCACCATCCCGGAAAGGTCACTCTCTGCATTACTTCTGGCAATCGGGAGTCCTGCAGTGAGATCAGAGGCTTT GAGTACCGAGCTAAGGATAGTAGTTGTGCTCACTGTATCTTATCCCAGACAGAAGCTACTAAGAGTCCAGATGAGCTATTGTTACTTTTCAGATTTGTGC AGATGCTTCTGTCTGATTATTCTTTGCAGAGAGGAGACTCTGTAGAAATGGGAATTCATCTTCTGAGAGAATTGAAGGCTGATGATGATACATGGGGTGA TATCATAGAGGCTCTCTTAGTTGGCAGTGGAACTTCATCCATGACAGTCGATTGGCTTCTGCAACAACTTCTGAATGACAAGCTGCAGCAGTGGCTTTCC TCCAAGTCTCAGGAAGGACATGATCAACCTGGGTGTTCATTTTCCAAGAAAGAGCAAGGGATCATTCACATGGTTGCTGGGTTAGGCTTTGAGTGGGCCT TAAGCCCAATTCTCAGTCATGGAGTCAGTATAAATTTCCGTGACATTAATGGGTGGACCGCTCTCCACTGGGCTGCTCATTTTGGAAGGGAAAAAATGGT TGCTTCCCTTTTAGCTTCTGGTGCATCAGCTGGGGCTGTGACTGATCCTAGTCCACAAGATCCAATTGGCAAAACCCCAGCATCCATTGCTGCCACCAGT GGGCACATGGGACTTGCAGGTTATCTTTCAGAGGTGGCACTAACTAGCCATCTTTCATCTCTCAGACTGGAGGAAAGTCAGCTTTCTATAGGCTCTGCTG AGGTTCAAGCTGAAAGAACTTTAGATAGCATCTCAAAGGAGAGCTTTGCTGCCACTGAAGATCAGATTTTACTTAAAGATACCTTGGCTGCGGCACGGAA TGCAGCTCTGGCAGCTGCACGAATACAATCTGCTTTTCGTGCACATTCTTTCAGAAAGCGATTACAGAGAGAAGCTACTAGTTTAGATGAGTATGGTATC TGTGCTGGTGAAATTCAAGGGCTTTCGTCTATGTCAAAGCTGGCCTTTCGTAATAATTCCCATGTCATTAATTCAGCTGCATTATCCATTCAGAAGAAAT ATCGAGGATGGAAAAGTCGCAGGGATTTTCTAGCACTTAGACAGAAAGTTGTGAAGATACAGGCTCATGTGAGAGGCTATCAGATTAGGAGGAACTACAA GATAATATGCTGGGCTGTTGGAATTCTAGATAAGGCAGTATTGCGGTGGCGACGCAAAGGAATCGGTTTGCGAGGTTTCCGGAATGTGATGGAATCCATT GATGAAAGTGAAGATGAAGATATTCTCAAGATTTTCCGCAAACAGAAAGTGGATGGAGCTATTAATGAGGCTGTCTCACGTGTGCTATCAATGGTTAAGT CTCCAGATGCACGTCAGCAATATCATCGGACGCTGAAACAATACCGCCAAGCTAAGGCGGAACTTGGTGGCACCAGTGAACCAGCAGCATCCACTTCTCT GGCTGATGCGACTGAGATGGAAAATGATCTTGTACCATTTCAAGTAGAAGCAACTTCTGATGTACTGTACTTACCGATGTTCACTCTAGTTGACTGA
AA sequence Show only first row Show all	>Potri.001G057800.1 pacid=42793101 polypeptide=Potri.001G057800.1.p locus=Potri.001G057800 ID=Potri.001G057800.1.v4.1 annot-version=v4.1 MLQSGYDINSLFEEAQTRWLKPAEVIFILQNHDKYQFTEKPPQKPTSGSLFLFNKRVLKFFRRDGHNWRKKKDGRSVGEAHERLKVGNVEALNCYYAHGE QNQNFQRRSYWMLDQAFEHIVLVHYRDITEGKPSPGSAAQLSPIFSYSPGTNTSQTQGSTSAISSVYEPYQSFSSPASVDVSSGLGIKDNEVGRTAEFTS SANKEVTQFFRRLEEQLSLNEDSAEEIGPFGAEEGAINDTKILEYVNNISKEDQSKNLLHGSLYIVDYQSYGGLAGNQLERNNLAPLQDAGDSGAYQQPY SHYYTDGSEEPLPWNEGIESYKTSSGIEYQEKTKSSLSTEPAQEQENSYWINFNEPNVRNSSLLLPQEVENFELPAYSSVIETHENNSNFYAMLYDQDHL GIPNEADSNLTVAQQQKFTIHEISPEWGYATEATKVIIVGSFLCDPSESSWMCMFGDIEVPLQIIQEGVIRCECPPHHPGKVTLCITSGNRESCSEIRGF EYRAKDSSCAHCILSQTEATKSPDELLLLFRFVQMLLSDYSLQRGDSVEMGIHLLRELKADDDTWGDIIEALLVGSGTSSMTVDWLLQQLLNDKLQQWLS SKSQEGHDQPGCSFSKKEQGIIHMVAGLGFEWALSPILSHGVSINFRDINGWTALHWAAHFGREKMVASLLASGASAGAVTDPSPQDPIGKTPASIAATS GHMGLAGYLSEVALTSHLSSLRLEESQLSIGSAEVQAERTLDSISKESFAATEDQILLKDTLAAARNAALAAARIQSAFRAHSFRKRLQREATSLDEYGI CAGEIQGLSSMSKLAFRNNSHVINSAALSIQKKYRGWKSRRDFLALRQKVVKIQAHVRGYQIRRNYKIICWAVGILDKAVLRWRRKGIGLRGFRNVMESI DESEDEDILKIFRKQKVDGAINEAVSRVLSMVKSPDARQQYHRTLKQYRQAKAELGGTSEPAASTSLADATEMENDLVPFQVEATSDVLYLPMFTLVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.001G057800 [exp]	0	1
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	4.47	0.8382
AT2G37840			Protein kinase superfamily pro...		Potri.006G092900 [exp]	7.48	0.8067
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	8.12	0.8514
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.002G055300 [exp]	12.48	0.7811
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.007G126900 [exp]	13.15	0.8521
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.010G224700 [exp]	14.42	0.7562
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	15.87	0.8004
AT1G43760			DNAse I-like superfamily prote...		Potri.006G175087 [exp]	20.39	0.7983
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	23.95	0.7696
AT1G21280			unknown protein		Potri.001G247404 [exp]	25.27	0.8448

Compare expression of checked genes

Potri.001G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.