Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03710 156 / 2e-48 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 149 / 8e-45 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT1G26310 149 / 1e-44 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT1G69120 149 / 1e-44 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT5G65050 144 / 6e-44 MADS MAF2, AGL31 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) AT3G02310 147 / 7e-44 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G65060 144 / 2e-43 MADS FCL3, MAF3, AGL70 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) AT5G60910 142 / 3e-42 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT5G65070 140 / 4e-42 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G24260 141 / 8e-42 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169850 [exp] 273 / 9e-94 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.003G170200 [exp] 268 / 3e-92 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G170000 [exp] 207 / 2e-68 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169700 [exp] 207 / 4e-68 AT5G65070 137 / 1e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.012G062300 [exp] 153 / 1e-46 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115500 [exp] 149 / 5e-45 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 149 / 7e-45 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G099700 [exp] 146 / 1e-43 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098500 [exp] 145 / 3e-43 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034663 [exp] 151 / 2e-45 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10007983 [exp] 151 / 3e-45 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 151 / 3e-45 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10005080 [exp] 150 / 7e-45 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 144 / 9e-44 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034662 [exp] 145 / 3e-43 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10006715 [exp] 144 / 6e-43 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10034371 [exp] 144 / 2e-42 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026679 [exp] 142 / 2e-42 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 140 / 8e-42 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.001G058200.2 pacid=42791082 polypeptide=Potri.001G058200.2.p locus=Potri.001G058200 ID=Potri.001G058200.2.v4.1 annot-version=v4.1 ATGGGTCGTAAGAAAGTAGAGCTAAAACGAATCGAAAACAAGAGCAGTCGCCAAGTTACTTTCTCAAAGAGGAGAAATGGATTGATTAAGAAAGCTCACG AACTCTCTGTTCTTTGTGACGTCCAAGTAGCTCTCCTCACCTTTTCAAATGGAGGCAAGCTCTATGAATTCTCTAGCGTTGGCAGTATAGCCAAAATCCT CGAGCGTTACAAGAGTCATTCTGAAGTGATGGCTACTTCATCTAAAGGTGCTAATGATTCAGAGGTATACTTTGGTAAATACGCAAATTTGAAATCAGCT GCGGAGATACTGCAAATACCTCAAAGGAAACTTGAAGGTACATGTCCTGGGGAGCAGACCTTGAGTGAGTTTGTGCAACAAGCGACACAGCTTGATGCTG CACTAACATATGTCAGAGCTAGAAAGATGCAACTGATGCTGGATTCGGTGAAGTCTCTCCAGGACAAGGAAAAGATGCTGAAAGAGGAAAACCAACTGCT ACAGAAACAGATTGTAGCAATGAAGAATGGTGGTGAAATTTATAACGGCAAGGTGGATCACCCTTTGGGTCATCCTCCACAACAAACAACACTGTGTTTG CTTAAATAG
AA sequence Show only first row Show all	>Potri.001G058200.2 pacid=42791082 polypeptide=Potri.001G058200.2.p locus=Potri.001G058200 ID=Potri.001G058200.2.v4.1 annot-version=v4.1 MGRKKVELKRIENKSSRQVTFSKRRNGLIKKAHELSVLCDVQVALLTFSNGGKLYEFSSVGSIAKILERYKSHSEVMATSSKGANDSEVYFGKYANLKSA AEILQIPQRKLEGTCPGEQTLSEFVQQATQLDAALTYVRARKMQLMLDSVKSLQDKEKMLKEENQLLQKQIVAMKNGGEIYNGKVDHPLGHPPQQTTLCL LK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03710	MADS	AGL3, SEP4	SEPALLATA 4, AGAMOUS-like 3, K...		Potri.001G058200 [exp]	0	1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	4.69	0.8443
AT1G55340			Protein of unknown function (D...		Potri.019G035300 [exp]	10.95	0.7583
					Potri.013G084650 [exp]	16.58	0.7793
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	19.28	0.7871
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	21.67	0.7981
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	23.66	0.7819
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.014G081000 [exp]	25.03	0.7345
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	26.94	0.8058
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Potri.018G001600 [exp]	27.11	0.7457
AT1G37130		NIA2-1, CHL3, B...	CHLORATE RESISTANT 3, ARABIDOP...		Potri.005G172400 [exp]	27.92	0.7682	NIA2.2

Compare expression of checked genes

Potri.001G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.