Plant FIBer expression Database

Potri.001G058500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G169500
[exp]
151 / 7e-49 ND /
Potri.001G328300
[exp]
40 / 4e-05 AT3G01960 54 / 6e-10 unknown protein
Potri.015G098500
[exp]
37 / 0.0004 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G058500.1 pacid=42789272 polypeptide=Potri.001G058500.1.p locus=Potri.001G058500 ID=Potri.001G058500.1.v4.1 annot-version=v4.1
ATGGAGGCAAAACACAGAGGATCAAGTCAAGGGTTTGTGAGAGGTAATAAGATGGTCAAGTCCTTGTTTCGAGTCACCAAACCAGCTTCTAAGCAAGTGC
AATCTAGTAGCAGGGTCAGTCCGAGCCCATGTACCCCAAATGGTTCTGAAGTAGATTCCCCCACTCGCCAGAGCTACTACGCATATCCTCCATCAATCCA
CAAGGTTTCCATTACTAAGTTGAGAGGTTTTCCAGACATTGGTGGCGACGAAAATGTAGACATGAAAGCTGCAACCTACATTTCATATGTTCGAGAGCGA
TTCATGCTTGAGAGAGCTGAGTTGGAGGCATTGTAA
AA sequence
>Potri.001G058500.1 pacid=42789272 polypeptide=Potri.001G058500.1.p locus=Potri.001G058500 ID=Potri.001G058500.1.v4.1 annot-version=v4.1
MEAKHRGSSQGFVRGNKMVKSLFRVTKPASKQVQSSSRVSPSPCTPNGSEVDSPTRQSYYAYPPSIHKVSITKLRGFPDIGGDENVDMKAATYISYVRER
FMLERAELEAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G058500
[exp]
0 1
Potri.009G080100
[exp]
1.00 0.9321
Potri.016G013350
[exp]
2.44 0.8471
AT1G71692 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) Potri.013G102600
[exp]
6.92 0.8463
AT4G28440 Nucleic acid-binding, OB-fold-... Potri.017G014400
[exp]
11.61 0.7877
AT5G64530 NAC ANAC104, XND1 Arabidopsis NAC domain contain... Potri.007G105000
[exp]
12.84 0.8190
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Potri.004G094100
[exp]
13.49 0.7676
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Potri.011G097500
[exp]
14.14 0.7096
AT5G04080 unknown protein Potri.006G043300
[exp]
14.69 0.8388
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G182000
[exp]
15.81 0.7853
AT1G29160 DOF AtDof1. 5 Dof-type zinc finger DNA-bindi... Potri.004G056900
[exp]
16.24 0.8000 Pt-DOF2.2

Potri.001G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.