Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 194 / 7e-59 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G04960 92 / 7e-21 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT2G02730 72 / 3e-14 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G27000 65 / 1e-11 Protein of unknown function (DUF1664) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169200 [exp] 462 / 4e-164 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.010G030400 [exp] 147 / 3e-43 ND / Potri.015G116450 [exp] 115 / 2e-28 AT4G19080 102 / 9e-24 Protein of unknown function (DUF594) (.1) Potri.014G160800 [exp] 97 / 8e-23 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.002G219300 [exp] 96 / 3e-22 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.010G092700 [exp] 74 / 1e-14 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.008G149000 [exp] 72 / 6e-14 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011347 [exp] 185 / 2e-55 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10003127 [exp] 170 / 2e-50 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10013269 [exp] 92 / 5e-21 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10036718 [exp] 92 / 8e-21 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10037210 [exp] 79 / 4e-16 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1) Lus10014626 [exp] 76 / 5e-15 AT1G04960 318 / 3e-108 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10030793 [exp] 73 / 1e-13 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10033807 [exp] 60 / 5e-10 AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [poplar] [flax] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Potri.001G058700.1 pacid=42789327 polypeptide=Potri.001G058700.1.p locus=Potri.001G058700 ID=Potri.001G058700.1.v4.1 annot-version=v4.1 ATGGCTATTCCTCTCGGCAAGCTAACTATTCTCGTCGGTGCAGGTATTCTTGGCTCAGTTCTTGCGAAAGAGGGGCGCATGCCTGATGTTTCTAGTTTTG TTTCAGGAGCTTTCAAGATTGCTCTCAGGCAACTTAAACGAGATGATTCTACTTCATCAGTTAGCAAGTCTAGCAAGCCTCCAAATGACTCTTTGATGGC TCAGGTAACCAGCCTTCGACAAGAGCTGCAAATGTTGGCATCAAGTAGACCAGTCACAATTGTAACTGCAAGTGGGACAGGTGCTAATAAATATGGTGTA GTTGTTGTGGTGATAGTTGTTGGATATGGCTATGTTTGGTGGAAGGGTTGGAAACTTCCTGATATGATGTTTGCAACCAGGCGTAGTTTATCTGATGCTT GCACTTCTATAGGCCAACAACTAGAGAATGTTTATGGGTCAATCCGGAGTACCAGGAGGCATTTATCTTCAAAGATCGATGGTGTGGACACAAATTTGAA TGCCATTGCAGAACTGACAGCCAGTACTCAAGAAAGGGTTACTGAATTGCGAGAAGATTCAAGTAAGATCGGCAATGATGTTCGATATGTCCGTGATGCT GTTGAAACATTGGAACTAAAAATTAGCAGAATTGAAGGGAAACAGGATTTGACAACCCTAGGAGTAAAGAGGCTGTGTGACTATGCCTCCAGTTTGGAAA ACAACTTACTTGAAGAGAATGTCCAGACTTCAGCTTCCAGTTCACGGCTAGCATTCTCATCAAAGGCTGGGGCATTACCTGCTCCATCAAGTGAACCATC AACTCCATCAAGTGAACCATCAACTCCTTCTGCCTTGAATGGATCTCAAGAGGTTCAAAGGCTCCCTCGCAATGCTGCATCAGCCTCCAGCCAGAAGGGA AGTACTGGGATTTCAGGAGTGGCTGAGGTTGCTAGCAGCCTTGGGATTTCAAATGGTATCCATACACCAGAAGAAACAAGTAATGGAACAAGTTGGTTTA AACCGGCATTTCTTATGAGAACCCGCAGCGCAATAAACAGTGTAGTGCAACAAACAAGTTCAAGTAAACAGCAATCATGA
AA sequence Show only first row Show all	>Potri.001G058700.1 pacid=42789327 polypeptide=Potri.001G058700.1.p locus=Potri.001G058700 ID=Potri.001G058700.1.v4.1 annot-version=v4.1 MAIPLGKLTILVGAGILGSVLAKEGRMPDVSSFVSGAFKIALRQLKRDDSTSSVSKSSKPPNDSLMAQVTSLRQELQMLASSRPVTIVTASGTGANKYGV VVVVIVVGYGYVWWKGWKLPDMMFATRRSLSDACTSIGQQLENVYGSIRSTRRHLSSKIDGVDTNLNAIAELTASTQERVTELREDSSKIGNDVRYVRDA VETLELKISRIEGKQDLTTLGVKRLCDYASSLENNLLEENVQTSASSSRLAFSSKAGALPAPSSEPSTPSSEPSTPSALNGSQEVQRLPRNAASASSQKG STGISGVAEVASSLGISNGIHTPEETSNGTSWFKPAFLMRTRSAINSVVQQTSSSKQQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	0	1
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	1.73	0.8310	MHK.1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.014G134900 [exp]	2.44	0.8354	NHX1.2
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	4.58	0.8361
AT5G19430			RING/U-box superfamily protein...		Potri.001G275900 [exp]	5.47	0.7920
AT2G46060			transmembrane protein-related ...		Potri.014G087300 [exp]	6.92	0.7871
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	8.00	0.8181
AT5G18260			RING/U-box superfamily protein...		Potri.006G180600 [exp]	12.96	0.7630
AT3G03560			unknown protein		Potri.013G073400 [exp]	14.69	0.7935
AT1G24310			unknown protein		Potri.008G176100 [exp]	15.16	0.8153
					Potri.003G154301 [exp]	19.44	0.8131

Compare expression of checked genes

Potri.001G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.