Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60740 1672 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1437 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53390 1335 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31770 200 / 8e-54 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G21090 195 / 8e-52 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 194 / 2e-51 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT3G25620 188 / 2e-51 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT5G06530 193 / 3e-51 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G17840 193 / 4e-51 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT4G27420 189 / 2e-50 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169000 [exp] 2030 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 1503 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.010G225200 [exp] 1482 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G236500 [exp] 206 / 1e-55 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 204 / 3e-55 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.013G111900 [exp] 191 / 7e-51 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.009G051300 [exp] 191 / 1e-50 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.010G131900 [exp] 189 / 4e-50 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.019G083000 [exp] 189 / 4e-50 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016115 [exp] 1694 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10041325 [exp] 1620 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 1603 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10038714 [exp] 1381 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 1380 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023020 [exp] 1269 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10023199 [exp] 942 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10033315 [exp] 200 / 6e-56 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 201 / 4e-54 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 198 / 3e-53 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.001G058900.1 pacid=42793529 polypeptide=Potri.001G058900.1.p locus=Potri.001G058900 ID=Potri.001G058900.1.v4.1 annot-version=v4.1 ATGATCAGAGATAAGTTTAATAAATTAAGACACAACCATTGCTGTTTTCTCTCTGTATCCATCTTTGTTTTTGCATTAGCGTTGTCATTGAGCCCTATTT ATTGTCAACAGTCTGATGGCAATGACAACAGTACGGCCACAGAAGACCTATTTTCAGAGCTGGTCTACAACAGTTTCTCAAACTTTACCTCTGTGTTCAA GCAAGATATTGCCAAATATTTTGGTTTCTGCATAATTGACGTGGATGAAGATTGGAATATGGCATTCAATTTCTCCAAAAAAACACAATTCATATCCGAT TGCGCCAAGAAAACAAACGGAGATATAACAGCACGTATATGCACAGCAGCAGAAATAAAATTCTACTTCAACAGTTTCTTTGAAAAAGGCACAAAGAAAG CAAACTATTTGAAACCTAACAAGAACTGTAATTTGAGTTCATGGGTTTCTGGATGTGAGCCAGGATGGGCTTGTGGAGTTGGCCAAGGTCAAAAGGTTGA CCTCAGAGATTCAAAGGACATTCCTGATAGAACTACAAACTGTGCAACTTGTTGTGAGGGTTTCTTCTGCCCTCATGGTATTACTTGCATGATACCTTGT CCATTGGGTGCTTACTGCCCACTAGCGAAACTGAACAAAACCACTGGCATATGCGACCCATACCATTACCAATTGCCTCCTGGAAACCCAAACCATACAT GTGGTGGAGCAGATGTTTGGGCCGATATTTTAAGTAGCGGCGAGATATTCTGTTCAGCAGGATCATACTGTCCGTCCAATATCCAAAAAATTCCTTGCAG TCGTGGACATTACTGCAGGACTGGTTCAACGTCTCAAACAGGGTGTTTTAAGCTGGCAACTTGTGAACCACGCTCAACAAATCAGAACATCACTGCATAC GGCATTTTATTTTTCGCTGGATTAAGCTTTCTGCTCATCATTATGTACAACTGTTCTGATCAAGTTCTTGCGACTCGAGAGAAAAGACAGGCACAGACAA GGGAGAAGGCAGTTCAAAGTGTAAGAGAAACTGCACAAGCACGTGAAAAATGGAAATCTGCAAGAGACATTGCCAAGAAGGGTGCCATTGGACTGCAAAC TCAGTTGTCACGCACATTTTCTCGTACAAAGTCTAAAAAGCCAGCAGAACAGCTAAAAGGTTTAGGTCAAGCTAAACCTGGAACAGATGCTGCTCTACCA CCTATGCCTGGAGGTAGTTCATCTTATCAATCATCTGCAAAAGGGAAGAAAAAGGAAAAGAGCAACCTCACACAGATGCTGGATGACATTGAGAACAATC CCGAGGGTCATGAAGGCTTCGATTTTAAGATTGGAGATAAAAACACAAGAAAGAATGCACCAAGGGGTAAGAAGTTGCATACTCAGAGTCAAATGTTCAG GTATGCATATGGACAGATTGAGAGAGAGAAAGCTATGCAGGAGCAGAACAATAATTTGACCTTCTCTGGGGTAATTTCAATGGCTAACGATATTGAAATC AGGAAAAGGCCAACTTTGGAGATTGCTTTTAAAGATTTAACCCTCACTTTGAAGAGTAAACGCAAACATCTGCTAAGATGTGTGACTGGGAAATTATCGC CTGGCCGAGTTTCCGCTGTAATGGGTCCATCTGGGGCTGGAAAAACAACATTTCTTTCTGCTTTGACAGGAAAGGCAACTGGTTGCGCCATGTCTGGTAT GGTTCTTGTGAATGGTAAGACGGACCCGATCCAAGCATACAAGAAAATCATTGGTTATGTGCCTCAAGATGATATTGTGCATGGGAACCTGACAGTGGAG GAAAATCTCTGGTTCAGTGCAAGATGCAGACTCTCCGCTGATCTACCAAAACCAGAAAAGGTTCTAGTTGTTGAAAGAGTTATTGAGGCCTTGGGCCTGC AGGCAGTGCGAGATTCTCTGGTTGGGACAGTGGAAAAGCGAGGAATTTCTGGAGGTCAAAGAAAACGTGTCAATGTTGGTCTTGAAATGGTTATGGAACC TTCACTTCTGATATTAGATGAACCCACATCTGGCTTGGACAGTTCATCCTCCCAGTTGCTACTTAGAGCTCTTCGACGTGAAGCTCTTGAAGGAGTAAAC ATATGCATGGTTGTACACCAACCTAGCTATACATTATTCAGGATGTTTGATGATTTGATACTTCTAGCTAAAGGTGGCTTGACAGCATATCACGGATCAG CAAAGAAAGTTGAGGAGTACTTTGCTGGCCTTGGGATTACTGTACCTGAGCGTGTGAATCCTCCAGATTACTTCATTGACGTTTTGGAGGGCATTGCAAA ACCAAAATCAGGGGTGAACTATAAGCAACTTCCAGTTAGATGGATGCTTCATAATGGCTACCCAGTTCCTATGGATATGCTGCAGAATACAGATGGGCTG GGACTACCCTCCGGTGAAAATTCTGCTCATGGAGCAAGTGAAGCTGGATCTGAAACAGAGTCTTTTGCTGGAGGTTTTTGGCAGGATCTGAAAGCTAATG TTGAGTCAGAGAAAGAAAAGTTGCTGCACGATTTATCAAAATCAGGCGACTTATCCGGACGGAGAAGCCCTGGAGTATATCAGCAGTATAGGTACTTCCT TGGGAGGGTTGGAAAGCAGCGGCTACGAGAAGCAAGGGCACAAGCTGTCGATTATTTGATTTTATTGCTAGCTGGAATCTGCTTAGGAACACTAGCTAAA GTGAGCGATGAAACTTTTGGGGTGCTTGGTTACACATACACTGTCATTGCAGTTTCACTGCTCTGTAAGATTGCGGCTTTGAGATCATTTTCCCTGGATA AGCTACATTACTGGAGAGAGAGATCTTCTGGTATGAGCAGCCTAGCAAACTTTCTTGCGAAGGATACAATAGACCATTTCAGCACAATTGTCAAGCCACT TGTCTATCTGTCAATGTTCTACTACTTCAACAATCCAAGATCAACAGTCATAGATAACTACGTAGTCTTAATCTGTCTGGTGTATTGTGTGACGGGAATT GCTTACGCGATGGCCATCTTCTTTGAACCTGGTCCAGCCCAACTGTGGTCAGTGTTGCTTCCGGTTGTTCTAACCCTGATAGCAACCCAAAGTGAAAACG GCGTTGTTGTGGATTATATATCTGACTTGTGCTATACCAAGTGGGCACTGGAAGCATTTGTGATATCAAATGCTAAAAGGTACTACGGAGTTTGGCTGAT AACAAGGTGTGGTTCACTCATGGAAAGTGGGTATGATCTAGGCCATTGGTATCGTTGTTTAATCTTTCTTGTTTTAACTGGTATAGCTAGTCGTGTTGCT GCCTTCTTCATTATGATTACCTTCCACGGGAAGTGA
AA sequence Show only first row Show all	>Potri.001G058900.1 pacid=42793529 polypeptide=Potri.001G058900.1.p locus=Potri.001G058900 ID=Potri.001G058900.1.v4.1 annot-version=v4.1 MIRDKFNKLRHNHCCFLSVSIFVFALALSLSPIYCQQSDGNDNSTATEDLFSELVYNSFSNFTSVFKQDIAKYFGFCIIDVDEDWNMAFNFSKKTQFISD CAKKTNGDITARICTAAEIKFYFNSFFEKGTKKANYLKPNKNCNLSSWVSGCEPGWACGVGQGQKVDLRDSKDIPDRTTNCATCCEGFFCPHGITCMIPC PLGAYCPLAKLNKTTGICDPYHYQLPPGNPNHTCGGADVWADILSSGEIFCSAGSYCPSNIQKIPCSRGHYCRTGSTSQTGCFKLATCEPRSTNQNITAY GILFFAGLSFLLIIMYNCSDQVLATREKRQAQTREKAVQSVRETAQAREKWKSARDIAKKGAIGLQTQLSRTFSRTKSKKPAEQLKGLGQAKPGTDAALP PMPGGSSSYQSSAKGKKKEKSNLTQMLDDIENNPEGHEGFDFKIGDKNTRKNAPRGKKLHTQSQMFRYAYGQIEREKAMQEQNNNLTFSGVISMANDIEI RKRPTLEIAFKDLTLTLKSKRKHLLRCVTGKLSPGRVSAVMGPSGAGKTTFLSALTGKATGCAMSGMVLVNGKTDPIQAYKKIIGYVPQDDIVHGNLTVE ENLWFSARCRLSADLPKPEKVLVVERVIEALGLQAVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVN ICMVVHQPSYTLFRMFDDLILLAKGGLTAYHGSAKKVEEYFAGLGITVPERVNPPDYFIDVLEGIAKPKSGVNYKQLPVRWMLHNGYPVPMDMLQNTDGL GLPSGENSAHGASEAGSETESFAGGFWQDLKANVESEKEKLLHDLSKSGDLSGRRSPGVYQQYRYFLGRVGKQRLREARAQAVDYLILLLAGICLGTLAK VSDETFGVLGYTYTVIAVSLLCKIAALRSFSLDKLHYWRERSSGMSSLANFLAKDTIDHFSTIVKPLVYLSMFYYFNNPRSTVIDNYVVLICLVYCVTGI AYAMAIFFEPGPAQLWSVLLPVVLTLIATQSENGVVVDYISDLCYTKWALEAFVISNAKRYYGVWLITRCGSLMESGYDLGHWYRCLIFLVLTGIASRVA AFFIMITFHGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.001G058900 [exp]	0	1
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.013G108300 [exp]	1.41	0.9762
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	3.87	0.9712
AT4G31980			unknown protein		Potri.003G206201 [exp]	6.24	0.9726
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056700 [exp]	10.19	0.9539
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127700 [exp]	10.24	0.9609
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009000 [exp]	10.95	0.9667
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.004G044400 [exp]	12.32	0.9573
AT4G05030			Copper transport protein famil...		Potri.016G002600 [exp]	20.97	0.9635
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	21.63	0.9708	QLEG.3
					Potri.013G062100 [exp]	22.24	0.9430

Compare expression of checked genes

Potri.001G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.