Plant FIBer expression Database

Potri.001G059100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14090 152 / 2e-42 unknown protein
AT3G27025 46 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G168700
[exp]
537 / 0 AT5G14090 151 / 4e-42 unknown protein
Potri.001G327500
[exp]
214 / 6e-66 AT5G14090 170 / 2e-49 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037042
[exp]
256 / 3e-82 AT5G14090 133 / 2e-35 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G059100.1 pacid=42790984 polypeptide=Potri.001G059100.1.p locus=Potri.001G059100 ID=Potri.001G059100.1.v4.1 annot-version=v4.1
ATGAAGTTACTAGGTTGGATGCACCGTAAGCTTCGGCAAAATGGTAGTGAAACACTGAAGGATTTTGCTATTGGCAATCCTTGCAATTGCCTTATAGGAC
AGCCATCCCTTGATGACCAACAATACTACACGAAACCGAACTATGGGACAAGAACATTTAGGCAAGCCCAGAAAGAGCACCTTCGAAAGTCTTTTGCTGG
TTTAGAAGCAGCTCGAGTAGAAGAAGAAGAAGGAGAAGAAGAAGAAGACTTTGAAGAAGAATCTTCAGCCGCAATATCCGAACTATTCCATGGCTTTCTG
GCAATTGGAACTCTTGGTTCGGAGCCAGTCAACACTGACCCTTCAACACCAACATTTCCCATCTCTGTTGAGAATATAACTGAGAAAGAGACTGAAGTGA
CAGAGAATGAACTTAAGCTTATCAATGATGAGTTGGAGAAGGTTCTGGCAGAAGATTGCAGCAATGACTCATCAGGAAGAAACAGTCATGTCAGTGCTGG
GAGAAGCAGTCATGGCAGCACCATTACACTCAGTGGCAAGCCAATGGAAGGGCGAGATTCCAATGCAGTCTGTCCTCTGCAGGGATATCTCTTTGGATCA
GCAATTGAACTGTCAGAGACAGCACCTGTGGCAAAGAAGGAGCACAGGACATCACTTGGCGAGCTATTTCAGAAAACAAAAATAGCAGAGGAAAATTATG
GTGTTAAATTTGAGAGGGAGGAGAAGCGCGTGGAGAAGGAGGCTGATAAATCTGCCGTGAATCTCATGAAAAAGATTCTGAAGAAGAAAATGCTCCATGC
TTCTTCTAGGAGCTCTACTTCCGCTGGAGGAGCAACTGTTGATTCTGCTTCAGCAGAAACAAAACTGCACAAGATCCTACACATGTTCCACAGGAAAGTT
CATCCTGAAAGCTCAACATCGACAAGGAAGGCCGACAAGCCCCCAAAAACCGAGAATAAGAAGAGCAACAACAATGGGGGAAACAACAATGGAGGACAGA
TGCTTCTGGATGAGGATATCACCATAGTTCCCCGAACCCTTTCAAAGAGGAGCATAAGGCGCTTCAAGAGTCAATCTAACCCACCCCACTTCATGTTTAC
TGGCTGTGACTCAAATGGAAGCAGGGAATGCTGGATTAAAACAGATGCAGACTACCTGGTGTTGGAGCTGTGA
AA sequence
>Potri.001G059100.1 pacid=42790984 polypeptide=Potri.001G059100.1.p locus=Potri.001G059100 ID=Potri.001G059100.1.v4.1 annot-version=v4.1
MKLLGWMHRKLRQNGSETLKDFAIGNPCNCLIGQPSLDDQQYYTKPNYGTRTFRQAQKEHLRKSFAGLEAARVEEEEGEEEEDFEEESSAAISELFHGFL
AIGTLGSEPVNTDPSTPTFPISVENITEKETEVTENELKLINDELEKVLAEDCSNDSSGRNSHVSAGRSSHGSTITLSGKPMEGRDSNAVCPLQGYLFGS
AIELSETAPVAKKEHRTSLGELFQKTKIAEENYGVKFEREEKRVEKEADKSAVNLMKKILKKKMLHASSRSSTSAGGATVDSASAETKLHKILHMFHRKV
HPESSTSTRKADKPPKTENKKSNNNGGNNNGGQMLLDEDITIVPRTLSKRSIRRFKSQSNPPHFMFTGCDSNGSRECWIKTDADYLVLEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14090 unknown protein Potri.001G059100
[exp]
0 1
AT1G26100 Cytochrome b561/ferric reducta... Potri.008G115200
[exp]
1.00 0.9089
AT1G11800 endonuclease/exonuclease/phosp... Potri.004G010400
[exp]
6.63 0.8382
AT5G45480 Protein of unknown function (D... Potri.006G013300
[exp]
11.13 0.8330
AT1G52190 Major facilitator superfamily ... Potri.001G185700
[exp]
14.86 0.8404
AT3G03620 MATE efflux family protein (.1... Potri.015G139400
[exp]
18.11 0.8248
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.010G246800
[exp]
20.00 0.8565
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.014G012700
[exp]
20.39 0.8570
AT5G51030 NAD(P)-binding Rossmann-fold s... Potri.015G108400
[exp]
27.92 0.8635
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Potri.006G004166
[exp]
28.61 0.8445
AT5G65360 Histone superfamily protein (.... Potri.003G208800
[exp]
37.41 0.8542

Potri.001G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.