Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27990 308 / 7e-106 unknown protein AT5G52420 105 / 5e-27 unknown protein AT5G23920 89 / 4e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168400 [exp] 417 / 5e-148 AT1G27990 318 / 5e-109 unknown protein Potri.015G146400 [exp] 117 / 1e-31 AT5G52420 259 / 3e-87 unknown protein Potri.012G143300 [exp] 67 / 2e-13 AT5G52420 126 / 3e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037043 [exp] 319 / 5e-110 AT1G27990 306 / 2e-105 unknown protein Lus10015763 [exp] 309 / 1e-106 AT1G27990 302 / 5e-104 unknown protein Lus10039248 [exp] 104 / 1e-26 AT5G52420 212 / 8e-69 unknown protein Lus10027495 [exp] 77 / 8e-17 AT5G52420 159 / 8e-49 unknown protein Lus10039249 [exp] 72 / 6e-15 AT5G52420 160 / 2e-49 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G059500.2 pacid=42793412 polypeptide=Potri.001G059500.2.p locus=Potri.001G059500 ID=Potri.001G059500.2.v4.1 annot-version=v4.1 ATGTCGGGTGTCTCTCTCGCTGTGACTCCACCACGTGAGTCTGATGGAACCACAACTTCAGCAACGAAGCATCAGCAAGAGGTTCCGCTTAAACAACAGC TACAGCAGAATTCTGTGGCTGGAGGAGTAATGGGATCATTGCGTGCTATAGAACTTCAACTGGTAGCTTTTATCATGGTTTTCTCAGTTAGTGGCCTTGT CCCACTACTTGATCTAGTCTTCCCTGCCTTTACCTCTGCTTATCTTTTAGCCCTCTCGCGTTTTGCCTTCCCTTCATATGGCAGAACCTCATCAGAAATT TTCCAAGGAAGCAGATTTTTTAGGTTCTACGTCATTTTTGGAACTACCATAGCGCTTTTCTTGCCTCTATCCTATGTGTTGGGTGGGTTTGCAAGGGGTG ATGATCATGCAGTCCGGTCAGCAACACCCCATTTGTTCTTGCTCTCATTTCAGATTCTTACTGAGAACATAATAAGCGGTCTGTCGTTGTTTTCACCACC TGTGAGGGCATTGGTACCCTTGCTTTATACGGTCAGGAGGATCTTTGTCGTCATTGATTGGATTAATGATGTGTGGCTTAACAAAACTCTACCAGCAAAT GCTCAAGTTAAGGACATTGCGTGGTATTGGTTTGGGAGGAGTCTAGCAGTAGCCAATCTAGCATATTTCTCAATCAATCTATTTATCTTTTTGATCCCGA TATTCCTTCCACGGGCTTTCGAGATTTATTTCAGGGAGAGGAATGAAATTGAATCAAAGATGGCAGAGGACAAGCGTTCTGCAGCTGCAAGCAAACCCAA ATCATCTGCATATAAGAAAGCTGCTTAG
AA sequence Show only first row Show all	>Potri.001G059500.2 pacid=42793412 polypeptide=Potri.001G059500.2.p locus=Potri.001G059500 ID=Potri.001G059500.2.v4.1 annot-version=v4.1 MSGVSLAVTPPRESDGTTTSATKHQQEVPLKQQLQQNSVAGGVMGSLRAIELQLVAFIMVFSVSGLVPLLDLVFPAFTSAYLLALSRFAFPSYGRTSSEI FQGSRFFRFYVIFGTTIALFLPLSYVLGGFARGDDHAVRSATPHLFLLSFQILTENIISGLSLFSPPVRALVPLLYTVRRIFVVIDWINDVWLNKTLPAN AQVKDIAWYWFGRSLAVANLAYFSINLFIFLIPIFLPRAFEIYFRERNEIESKMAEDKRSAAASKPKSSAYKKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27990			unknown protein		Potri.001G059500 [exp]	0	1
AT5G45410			unknown protein		Potri.001G131300 [exp]	14.07	0.8821
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177366 [exp]	18.22	0.9011
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.010G041100 [exp]	20.14	0.8645
AT2G41190			Transmembrane amino acid trans...		Potri.006G038700 [exp]	36.37	0.8496
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	52.11	0.8563
AT5G61820			unknown protein		Potri.015G108600 [exp]	53.66	0.8740
AT4G35760			NAD(P)H dehydrogenase (quinone...		Potri.005G106500 [exp]	53.88	0.8731
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G085000 [exp]	62.16	0.8594
AT5G20670			Protein of unknown function (D...		Potri.006G140600 [exp]	65.93	0.8571
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Potri.016G082100 [exp]	79.18	0.8362

Compare expression of checked genes

Potri.001G059500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.