Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13100 478 / 2e-170 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168300 [exp] 622 / 0 AT5G13100 481 / 1e-171 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037045 [exp] 498 / 2e-178 AT5G13100 471 / 1e-167 unknown protein Lus10015761 [exp] 494 / 8e-177 AT5G13100 466 / 2e-165 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02338 [poplar] [flax] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Potri.001G059700.2 pacid=42788524 polypeptide=Potri.001G059700.2.p locus=Potri.001G059700 ID=Potri.001G059700.2.v4.1 annot-version=v4.1 ATGGGGAAGTTGTTGTGCGATTCAACAACAACTGTCGCCGAAACGACATTTCAAACACCAACATCACCGATTGTTCACTGGAGGGACGATCCAAAAGTCA CCGTAGATAATTCGGAACAGACTCTAACTATCTCCGAACAAACCACGTGGGAGGACGTGATTGGCTTGGAAGACCAGCAAAGACGCCACTTACAGAGGCT CCAATCCAAAGGCGTGCTATGGAAGCATCCCAAGAACGACGAGTCGTATCCCGTGGTGGTATTCAAGCTGTCGCACGGGGGAGACGTGTCGGCGGACGGG AACTGCCTGTTCACCGCGTCGCAGAGGGCGATGGTGGCGAGTGAGATGGACGCGCGGGAGTTGAGGAGGAGGACGGCGAGGAGGTTTGTAGAGGACTTTG GATCTGTGAGTGGGGAAGAAAGGGAGGCGATAAATAATGCTATAAAGCATATGTATTCGCCGGATCTGAAGAACGGGTGGGGGATACATGTCGTTCAAGA GGTTAAGCTCTTAGCCAAAAAAGAAGATCGTGTTGCGTTGGATTCTGCTATCGATGAGCTTGTTCTCTTAGGGATGCAAAGAGAAATGGCAGCAGAGTCG ATATACAAAGAGAGGTGTATGGCGGTGAATGATGGCCCGAGTTGGGCAAAATACATGTCGATCTCCGGTTCGCATGATGATGAGTATGATATCATCACTT TGCAATATACTGAGGAAGGTTTGTTATACATTGATGAGAATAGAAAAGGTCATGCTGCAGCTTTTGGTGATGATATTGCAATAGAGTGTCTTGCAACAGA GTTCAAGCGTGAAATATATGTGGTGCAAGCACATGGATCCGATGGAATGGTTGACGAAGAAAATTGTGTCTTCTTTCTCCCACATCGACCTAGGAGTGAA ATTTGTGAACCCCCCTTCTTTCTCTTTATGAAGGGAACAGGCTGGTGTGGTGCTGGAGCTGATCACTATGAGCCTTTGATTGCTCATCCATCTTCACATC TTTCACAGGAGAAGGTTGCTGTAGTACTTGGAGGGCATTAG
AA sequence Show only first row Show all	>Potri.001G059700.2 pacid=42788524 polypeptide=Potri.001G059700.2.p locus=Potri.001G059700 ID=Potri.001G059700.2.v4.1 annot-version=v4.1 MGKLLCDSTTTVAETTFQTPTSPIVHWRDDPKVTVDNSEQTLTISEQTTWEDVIGLEDQQRRHLQRLQSKGVLWKHPKNDESYPVVVFKLSHGGDVSADG NCLFTASQRAMVASEMDARELRRRTARRFVEDFGSVSGEEREAINNAIKHMYSPDLKNGWGIHVVQEVKLLAKKEDRVALDSAIDELVLLGMQREMAAES IYKERCMAVNDGPSWAKYMSISGSHDDEYDIITLQYTEEGLLYIDENRKGHAAAFGDDIAIECLATEFKREIYVVQAHGSDGMVDEENCVFFLPHRPRSE ICEPPFFLFMKGTGWCGAGADHYEPLIAHPSSHLSQEKVAVVLGGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13100			unknown protein		Potri.001G059700 [exp]	0	1
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	8.24	0.8342
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	17.14	0.8395	Pt-DET3.1
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.006G157200 [exp]	18.16	0.7955	FATB1.1
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.006G000300 [exp]	20.00	0.8264	RAB11.6
AT5G39570			unknown protein		Potri.004G127400 [exp]	21.21	0.7723	LAP1.3
AT5G40600		EMB1875	unknown protein		Potri.003G101100 [exp]	27.23	0.8194
AT4G28290			unknown protein		Potri.001G449633 [exp]	41.17	0.7669
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	41.35	0.8247
AT4G32750			unknown protein		Potri.018G038600 [exp]	56.20	0.7454
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.018G132100 [exp]	62.25	0.7669

Compare expression of checked genes

Potri.001G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.