Plant FIBer expression Database

Potri.001G060300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015758
[exp]
820 / 0 ND /
Lus10037048
[exp]
241 / 3e-71 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF01979 Amidohydro_1 Amidohydrolase family
Representative CDS sequence
>Potri.001G060300.1 pacid=42791268 polypeptide=Potri.001G060300.1.p locus=Potri.001G060300 ID=Potri.001G060300.1.v4.1 annot-version=v4.1
ATGGAGACGAAGAGCAGCAGCAGCAGCAATTCAGTGACGATAATCCACAATGCCATGATCGTCACCATGGACCCCGAGAGTCGAGTCTTTAAGAACGGAG
GGATTGTTATCGAACAAGATAAAATCAAAGCCATAGGTCAATCCTCCGATATTCTTTCTCAATTCTCCTCTGTCGCGCACCATCTCCAAATCATAGACCT
TCACAGTCATATCTTACTTCCTGGATTTATAAACACGCACGTGCACACATCGCAACAGCTAGCGAGAGGGATAGCTGATGATGTTGATCTGATGACATGG
TTGCATCATCGTATTTGGCCTTATGAATCTAATATGACTGAGGATGATTCTTATCTTTCTACTTTACTTTGTGGAATTGAACTCATTCACTCTGGTGTTA
CTTGCTTTGCTGAAGCTGGGGGCCAGTATGTGTCTGGAATGGCTCGTGCTGTTGAAAAATTGGGCTTGCGCGCCTGCTTAACTGAGTCAATTATGGATAC
TGGCGAGGGTTTGCCTACATCTTGGGCTATGCGAACTACGGATGACTGTATTCAGTCTCAAATGGAGCTTTATGAGAAGCATCATAATACTGCAGATGGA
CGCATTAGAGTATGGTTTGGAATTAGGCAAATTATGAATTCAACTGATCGCCTACTTCTTGAAACTAGAAATACAGCTCAGGAACTGAAAACTGGAATTC
ACATGCATGTTGCAGAGATACCTTATGAGAATCAATTCGTGAAGGGTAATCGGAAAGTTGAACACGGGACTGTTACGCACTTGGAGAAGATAAACTTTCT
TCAAAACAACTTACTTTCAGCTCATACAGTTTGGGTTGACGACACTGAGATAGGTTTTCTTTCAAGAGCTGGTGTCAAAGTATCTCACTGTCCTGCTGCT
GCAATGAGAATGCTTGGTTTTGCACCTATTAGGGAGATGCTTGATTCTGGCATTTGTGTTTCCTTGGGAACAGATGGGGCACCATCAAATAATAGAATGA
GCATCGTTGATGAGATGTATCTAGCTTCTTTGATCAACAAAGGACGGGAAGTTTATGCGAAGGGAACAACTGATCCAACAGCTCTCCCAGCTGAAACAAT
TCTCAGAATGGGGACCATAAATGGTGCAAAAACAGTGCTCTGGGATAATGAAATAGGATCCCTTGAAATTGGGAAAAAGGCTGACATCACTGTGGTCCAT
CCCAACTCATGGTCCATGGTTCCTGTTCATGACTGCATTTCAAGCCTTGTGTACAGTATGAGGACTGAGAATGTTGTCTCCGTAATGTGCAATGGCAAAT
GGATTATGAAGGACAAGAAGATTGTGAATGTGGATGAGGGAGAGGTTTTGTTAGCGGCAAAGGAAGCTTCTAGCAAGATTTTGAAGAGGGCTGGTATCAG
CATACCCAACAGAATGAATGTCCTCTGA
AA sequence
>Potri.001G060300.1 pacid=42791268 polypeptide=Potri.001G060300.1.p locus=Potri.001G060300 ID=Potri.001G060300.1.v4.1 annot-version=v4.1
METKSSSSSNSVTIIHNAMIVTMDPESRVFKNGGIVIEQDKIKAIGQSSDILSQFSSVAHHLQIIDLHSHILLPGFINTHVHTSQQLARGIADDVDLMTW
LHHRIWPYESNMTEDDSYLSTLLCGIELIHSGVTCFAEAGGQYVSGMARAVEKLGLRACLTESIMDTGEGLPTSWAMRTTDDCIQSQMELYEKHHNTADG
RIRVWFGIRQIMNSTDRLLLETRNTAQELKTGIHMHVAEIPYENQFVKGNRKVEHGTVTHLEKINFLQNNLLSAHTVWVDDTEIGFLSRAGVKVSHCPAA
AMRMLGFAPIREMLDSGICVSLGTDGAPSNNRMSIVDEMYLASLINKGREVYAKGTTDPTALPAETILRMGTINGAKTVLWDNEIGSLEIGKKADITVVH
PNSWSMVPVHDCISSLVYSMRTENVVSVMCNGKWIMKDKKIVNVDEGEVLLAAKEASSKILKRAGISIPNRMNVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G060300
[exp]
0 1
AT4G35270 NLP2 Plant regulator RWP-RK family ... Potri.005G251700
[exp]
14.14 0.5626
AT1G13770 RUS3 ROOT UV-B SENSITIVE 3, Protein... Potri.008G095700
[exp]
17.54 0.6197
AT5G53850 haloacid dehalogenase-like hyd... Potri.011G118132
[exp]
17.88 0.6417
AT1G79460 ATKS1, ATKS, GA... GA REQUIRING 2, ARABIDOPSIS TH... Potri.008G082700
[exp]
21.21 0.6641
AT3G54010 DEI1, PAS1 PASTICCINO 1, FKBP-type peptid... Potri.016G105100
[exp]
22.80 0.5712 Pt-PAS1.2
AT5G47900 Protein of unknown function (D... Potri.014G123800
[exp]
24.45 0.6140
AT5G07300 BON2 BONZAI 2, Calcium-dependent ph... Potri.003G055501
[exp]
28.14 0.5762
AT1G30410 ATMRP13, ABCC12 ATP-binding cassette C12, mult... Potri.011G043100
[exp]
30.24 0.6324 Pt-ATMRP12.3
AT1G67420 Zn-dependent exopeptidases sup... Potri.010G060500
[exp]
36.98 0.5724
AT2G45690 PEX16, SSE1, AT... SHRUNKEN SEED 1, ARABIDOPSIS P... Potri.002G152300
[exp]
43.71 0.5626

Potri.001G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.