Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13150 658 / 0 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 554 / 0 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G58430 355 / 1e-113 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G72470 350 / 1e-111 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 342 / 6e-109 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G03540 336 / 2e-106 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT1G54090 332 / 4e-105 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 332 / 3e-104 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G07000 327 / 4e-103 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G52340 311 / 9e-97 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G068000 [exp] 637 / 0 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G325600 [exp] 620 / 0 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.013G152900 [exp] 366 / 5e-118 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.015G094800 [exp] 366 / 1e-117 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.019G124000 [exp] 361 / 7e-116 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.012G097100 [exp] 360 / 4e-115 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 352 / 1e-112 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 345 / 7e-110 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.010G241800 [exp] 317 / 5e-99 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015757 [exp] 696 / 0 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10011334 [exp] 664 / 0 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 659 / 0 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 570 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10012555 [exp] 563 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10037048 [exp] 527 / 6e-178 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1) Lus10022459 [exp] 356 / 2e-114 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10016764 [exp] 356 / 1e-113 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 354 / 7e-113 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 346 / 1e-112 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.001G060700.1 pacid=42789709 polypeptide=Potri.001G060700.1.p locus=Potri.001G060700 ID=Potri.001G060700.1.v4.1 annot-version=v4.1 ATGGAGAAACCCCCACCAGAGAAATCTGGTAGTTTTTCAAGAAATGGAAATGGCAATCAAATGGATGACAATCCAGGCCCTGCAGGACCTGAATCAGAAG CTGTCCATGTGAGATTAGATTGCCAGCAACCAGGGGAGTGTGAGCCTAATTCAAACCTTGAAGAGCCTTCTTCTGATCCAGAATTAAGCCTGCCTCAGGT CCTGAAAGATGTTGATCGATTTCTCGAATCATTATCCACGAGAAATGATGCATCTAACAACCCCCTGGATGTTCCAAACTCTGTAGAATCGTTGTTGGAA ATGATCCAAAAAATGATCACCAAATATGATTCCAGCGCAAAATTTGGCCAAAAGCAAGAAGAAGATTCGTCATTCATTGAATCTTTGAATTGCATTTCGA AGTTGATAAATGTTCTCGGCGAATTCCCTTCTAATTCCACCACAGCCTCCTGCTTCAACAGAGCCAGCACCATCCTGCATCTAGCCATGTCCTTATTAGA CAGTGAGTTCCGTTTAATTCTTGAAACTTGTAGTCAGGGTAACAATGCAGATCTCAAATCTCCAAAGCCATTAAAACAATCATCATTCAGTTCCCGTCAG GAATCTACTTACTGTGTTATACCAGAGTCCAAATCAAGCGAAGACGTGGAATTCCCTGCATATACATCAGAAGCAATCTCGAAAATGAACAGAATCGCCA CAGCAATGATCTCATCAGGCTATGAGAGTGAGTGTTGCATGGTTTACAACATGGTAAGGAGAAATGCATTCTCTAGCGAATTGGACAAGCTCGGTTTTGA AAATATCAGCATTGATGACGTACAAAGGATGCAATGGCAATCATTGGAAGGAGTAATTGCTATGTGGATCACTGTAATCAAGCATTCTTCCTCAGTTCTC TTCTCAGGCGAGCGGAAGCTTTGCAGCTCCATATTTTCTGAGCATCCATCAATATCTCAGAGATTATTCTGCCATATTGCATTAGCAGTTGCTGTAAGGT TTGTCAATTTTTCAGATGCAATAGCATTAACAAAGCGATCAGCTGAAAAATTATTCAAAATTTTGGACATGTATGAGGCACTGCGCGATTTAATTCCTTT TTTTGATGATGATACCTGTTCAAGTGAATGCTACGAAGAATTAAAATCTGAAATCTGGGCTGCAAAAGGCCGCCTGGGAGAGGTGGCCGTGAGCATTTTC TGTGATTTGGAGAATTCAATAAGAAGAGACAATGGCCGGACTCCTGTCCCGAGTGGTGCAGTTCACCCCTTGACACGCTACACCATGAATTATCTAAAAT ACGCCTGTGAGTATAAAGACACGTTAGAGCAAGTGTTTCAGAAGCACCAGAAAATGGAAGGGTTTGCTAATTCAAATGGCACTGTATTGGATATTAAGAA TGGAGCCAACGATGATGGGACTCCAAAGACTTCACCGTTTTCAGTGCAGTTGAATTCGATTATGGATTTGTTGGACGAGAATCTTGACATGAAATCAAAG CTGTATAGGGATCCTGCATTGAGGTGCATATTCCTGATGAATAATGGGAGATACATTCTGCAAAAGATAAAAGGTTCTGACGAGATTCATGATATGATGG GTGATACTTGGTGTCGAAAGCGATCATCCGATCTGAGGCAGTACCACAAGGCCTATACAAGAGAGACGTGGACTAGATTGTTGCAGTGCCTAAACCATGA TGGTTTGATGGTAAATGGGAAGTTATCCAAGACTATATTGAAAGAGAGGTTCAAGATGTTCTCCACCATGTTTGATGAGATACACAGGACACAAAGCACA TGGGTGGTGAGTGATGATCAGCTTCAGTCTGAGCTTCGGATTTCGGTATCGGCAGTGGTGACCCCGGCTTACCGTTCGTTTGTAGGGAGGTTCCAGCAGT ATTTGGCATCTGGTAGACAACCAGACAAGTATATAAAGTACCAACCTGAAGATATTGAGAATTTGATTGATGAATTGTTCGATGGAAATCCTACGTCCAT GGCCAGGAGGAGGACATAA
AA sequence Show only first row Show all	>Potri.001G060700.1 pacid=42789709 polypeptide=Potri.001G060700.1.p locus=Potri.001G060700 ID=Potri.001G060700.1.v4.1 annot-version=v4.1 MEKPPPEKSGSFSRNGNGNQMDDNPGPAGPESEAVHVRLDCQQPGECEPNSNLEEPSSDPELSLPQVLKDVDRFLESLSTRNDASNNPLDVPNSVESLLE MIQKMITKYDSSAKFGQKQEEDSSFIESLNCISKLINVLGEFPSNSTTASCFNRASTILHLAMSLLDSEFRLILETCSQGNNADLKSPKPLKQSSFSSRQ ESTYCVIPESKSSEDVEFPAYTSEAISKMNRIATAMISSGYESECCMVYNMVRRNAFSSELDKLGFENISIDDVQRMQWQSLEGVIAMWITVIKHSSSVL FSGERKLCSSIFSEHPSISQRLFCHIALAVAVRFVNFSDAIALTKRSAEKLFKILDMYEALRDLIPFFDDDTCSSECYEELKSEIWAAKGRLGEVAVSIF CDLENSIRRDNGRTPVPSGAVHPLTRYTMNYLKYACEYKDTLEQVFQKHQKMEGFANSNGTVLDIKNGANDDGTPKTSPFSVQLNSIMDLLDENLDMKSK LYRDPALRCIFLMNNGRYILQKIKGSDEIHDMMGDTWCRKRSSDLRQYHKAYTRETWTRLLQCLNHDGLMVNGKLSKTILKERFKMFSTMFDEIHRTQST WVVSDDQLQSELRISVSAVVTPAYRSFVGRFQQYLASGRQPDKYIKYQPEDIENLIDELFDGNPTSMARRRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	0	1
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142900 [exp]	1.00	0.9856
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	1.73	0.9720
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G013100 [exp]	4.24	0.9336
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	5.65	0.9523
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	6.78	0.8890
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	12.00	0.8980	Pt-MDPIP1.2
AT2G35910			RING/U-box superfamily protein...		Potri.010G243300 [exp]	12.16	0.8312
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.015G100000 [exp]	12.48	0.8855
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	12.64	0.9229
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	13.85	0.8881

Compare expression of checked genes

Potri.001G060700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.