Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13170 295 / 4e-100 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G23660 252 / 2e-83 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT3G48740 243 / 8e-80 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT4G25010 232 / 1e-75 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT5G50800 231 / 4e-75 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G50790 221 / 4e-71 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT2G39060 196 / 7e-62 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT3G16690 143 / 2e-41 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT4G15920 136 / 6e-39 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT1G21460 126 / 6e-35 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166800 [exp] 414 / 3e-147 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 262 / 2e-87 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101600 [exp] 232 / 1e-75 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 230 / 5e-75 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 226 / 4e-73 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 221 / 2e-71 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 192 / 3e-60 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 152 / 7e-45 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 149 / 5e-43 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003143 [exp] 243 / 1e-79 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10015754 [exp] 240 / 2e-78 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 239 / 3e-78 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10024770 [exp] 226 / 3e-73 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 223 / 7e-72 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10005935 [exp] 223 / 2e-71 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10040901 [exp] 221 / 4e-71 AT5G13170 236 / 8e-77 senescence-associated gene 29 (.1) Lus10016742 [exp] 211 / 2e-67 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10011335 [exp] 210 / 5e-67 AT5G13170 268 / 1e-89 senescence-associated gene 29 (.1) Lus10032553 [exp] 207 / 1e-65 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.001G060900.1 pacid=42793071 polypeptide=Potri.001G060900.1.p locus=Potri.001G060900 ID=Potri.001G060900.1.v4.1 annot-version=v4.1 ATGGCAGTGATGAACATGCAGCATCCTTTGGCATTTACGTTCGGCATCCTCGGTAACATCATCTCATTCATGGTGTACCTGGCTCCAGTGCCAACATTTA TCAGGATTTTAAGGAAAAAATCAACAGAAGATTTCCAATCCTTGCCTTATCTCGTGGCATTGTTTAGTTCTATGCTTTGGCTCTACTATGCAATGCTCAA AAACGATGAAATTCTTCTTGTCACCATCAACTCATTTGGATGTGTCATAGAGACTATATACATTGCCATTTATATCGCTTATGCAACAAGAGAGAGCAAG GTCTCAACAATCAAATTGCTTCTTTCTATGAACATGGGGTTGTTCTCGTTGATCATTCTCCTTACACATTTTCTTGCAAGTGGTTCAACTCGTGTCAAGG CTCTTGGTTGGCTTTGTGTTGCCTTCTCTGTATGCGTTTTTGCAGCACCCTTAAACATTGTGAAACAAATCATTCGAACAAAGAGCGTTGAGTTCATGCC GTTCACCTTGTCATTTTTCCTTACGTTGAGCGCTGTCATATGGTTTGCCTATGGCCTTTTCATCAAGGACATGTGTGTTGCTCTTCCGAACATCTTGGGC TTCGTCTTGGGGTTACTTCAGATGCTGCTGTATGGAATCTACAGAAATGCAGAGAAAAAGAAGATACCAGCTGAAAACTTGAAGAGCATTGTCATACTAG GCACATTAGGGGCTTCTGAAGTATATCCAGTTGATCCTCAACCTGATGTGAGTGCAGCGGAGCATGACCAAACAGAGGAGTCTAAGGAGAATGAGAAAAG CATGGAAGCTTCCCACGATGACCTCCAATCAAATGAATGTGCAGTTTGA
AA sequence Show only first row Show all	>Potri.001G060900.1 pacid=42793071 polypeptide=Potri.001G060900.1.p locus=Potri.001G060900 ID=Potri.001G060900.1.v4.1 annot-version=v4.1 MAVMNMQHPLAFTFGILGNIISFMVYLAPVPTFIRILRKKSTEDFQSLPYLVALFSSMLWLYYAMLKNDEILLVTINSFGCVIETIYIAIYIAYATRESK VSTIKLLLSMNMGLFSLIILLTHFLASGSTRVKALGWLCVAFSVCVFAAPLNIVKQIIRTKSVEFMPFTLSFFLTLSAVIWFAYGLFIKDMCVALPNILG FVLGLLQMLLYGIYRNAEKKKIPAENLKSIVILGTLGASEVYPVDPQPDVSAAEHDQTEESKENEKSMEASHDDLQSNECAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Potri.001G060900 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	1.00	0.9891
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	3.16	0.9821
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	7.14	0.9797
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Potri.001G173200 [exp]	7.74	0.9673
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Potri.002G206100 [exp]	11.66	0.9303
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232650 [exp]	12.84	0.9794
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G025000 [exp]	13.41	0.9794
AT5G62550			unknown protein		Potri.016G129250 [exp]	13.96	0.9794
					Potri.005G167150 [exp]	15.29	0.9084
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Potri.015G101700 [exp]	15.42	0.9790

Compare expression of checked genes

Potri.001G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.