Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02040 442 / 1e-155 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 425 / 2e-148 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2) AT5G43300 409 / 2e-142 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325200 [exp] 520 / 0 AT3G02040 509 / 0.0 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.017G063500 [exp] 520 / 0 AT3G02040 505 / 1e-180 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002582 [exp] 492 / 1e-174 AT5G43300 440 / 2e-154 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10012556 [exp] 487 / 1e-172 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10035175 [exp] 470 / 6e-166 AT3G02040 494 / 7e-176 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10011337 [exp] 462 / 7e-164 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10032006 [exp] 455 / 4e-160 AT3G02040 489 / 3e-174 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10041535 [exp] 188 / 8e-59 AT3G02040 205 / 4e-66 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.001G061100.1 pacid=42788615 polypeptide=Potri.001G061100.1.p locus=Potri.001G061100 ID=Potri.001G061100.1.v4.1 annot-version=v4.1 ATGGCTCTAAAAGCTGCTCATGTCTACGATGTTCCAAAACTTGATCAAGTCCAAGAAAATGCAGCATTGGCCCTCTGTTCTTCCCGATTGATCACTCAAT GTGTGAATATTGAGGGAAGTGATGACACCAAGCGAGGATTTAAATTCGGAAAATTTGTGGTGATGGGACATAGAGGGAGTGGAAAGAACATGTTACAATC TTGTGATCGGAGAATGAAATCCATCAAAGAGAATTCAATTCTCTCCTTCATTTCTGCTTCCAAGTTACCTCTGGATTTCATTGAATTCGACGTTCAGGTG ACCAAAGATGACTGTCCAGTCATTTTCCATGACAACTTCATCCTCACTGAACATAAGGGAGAACTTATTGAGAAGAGAGTTACTGACCTCACTTTAGATG AATTCCGTTCATATGGACCCCAAGATGAAGGTGGCAGTGAGGGGAAGTCCTTATTTAAGAAAACAAAAGATGGGAGAATCTTTGAATGGAAAGTTGAAGA AGATGCTCCTTTTTGTACACTGCAAGAGGTTTTCCAGAGAGTCGATGATACCATGGGCTTTAATGTTGAATTGAAGTTTGATGATAACATAATCTATAAA GAGGAAGAACTAAAACATATTCTTCAAGTAATTTTACAGGTGGTGTTTGAGCATGCCAAGGAGAGACCTGTAATGTTCTCAAGTTTTCAACCTGATGCAG CTCTGTTGATGAGGAAATTGCAGAGTACCTACCCTGTATTTTTCCTAACTAATGGAGGTTCAGAAATATACACGGATGTGAGAAGGAATTCCTTGGATGA GGCCATTAAGGTTTGCACAGAGGGTGGCCTCCAAGGAATAGTATCCGAAGTCAAAGCTGTCTTTAGAAATCCAGGAGCAGTAACAAGAATTAAAGAATCT AAGCTTTCCCTTATTACCTATGGCCAATTGAATAATGTTCCAGAGGTGGTACACATGCAACACTTGATGGGCATTGAAGGAGTGATTGTTGACCTAGTTC ACGAGATCACAGAGGCAGTCTCCCATTTTGTAGACTCTGCCAAAGATGGTGAAGAATCGGGCTTGTTTGAGGAGGAAGGGAAGATCCAAGTGAAAACAAA GCCTCGATTTTCAAGTGAAGAGCTCTCATTTCTGATGAAGCTGATATCTGAATTTATCCAGTCTTGA
AA sequence Show only first row Show all	>Potri.001G061100.1 pacid=42788615 polypeptide=Potri.001G061100.1.p locus=Potri.001G061100 ID=Potri.001G061100.1.v4.1 annot-version=v4.1 MALKAAHVYDVPKLDQVQENAALALCSSRLITQCVNIEGSDDTKRGFKFGKFVVMGHRGSGKNMLQSCDRRMKSIKENSILSFISASKLPLDFIEFDVQV TKDDCPVIFHDNFILTEHKGELIEKRVTDLTLDEFRSYGPQDEGGSEGKSLFKKTKDGRIFEWKVEEDAPFCTLQEVFQRVDDTMGFNVELKFDDNIIYK EEELKHILQVILQVVFEHAKERPVMFSSFQPDAALLMRKLQSTYPVFFLTNGGSEIYTDVRRNSLDEAIKVCTEGGLQGIVSEVKAVFRNPGAVTRIKES KLSLITYGQLNNVPEVVHMQHLMGIEGVIVDLVHEITEAVSHFVDSAKDGEESGLFEEEGKIQVKTKPRFSSEELSFLMKLISEFIQS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.001G061100 [exp]	0	1
AT5G22390			Protein of unknown function (D...		Potri.004G201500 [exp]	14.42	0.6869
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	24.91	0.6898
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.002G105000 [exp]	30.49	0.6851
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G219250 [exp]	35.56	0.6832
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	36.26	0.6894
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.005G082100 [exp]	40.98	0.6463
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016300 [exp]	41.84	0.6706
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G037900 [exp]	52.62	0.6738
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.005G051800 [exp]	62.16	0.6737
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.010G176500 [exp]	65.29	0.6615

Compare expression of checked genes

Potri.001G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.