Plant FIBer expression Database

Potri.001G061301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G061301.1 pacid=42789133 polypeptide=Potri.001G061301.1.p locus=Potri.001G061301 ID=Potri.001G061301.1.v4.1 annot-version=v4.1
ATGGCGAAGGAGAAAGATTCAGGAAGCACTGCGGTGGTTGAAGGTGCCTGTTCAAGTTATTATGTTTTATGTGCTGCTTTGCTTACTGAGCATGTACTGC
AAAAGCTCCATAAACTTTGGTCATTGGTGCCGGTGGAGTTGGTGAAAGTGACTGCAGAAGTAGCGAAATTTCACTTGATAAACAAATGCTGGAACGTGTT
ACCGCTGCTACTCGTCGTGAAGTATCTGTACTTTGTGGCTGCCTATGTTGCCACTCCTCGTAAAGAATCTTTTACTTTATGGCTGATGCAATCCCATGCT
CTTATCCGTGAATGA
AA sequence
>Potri.001G061301.1 pacid=42789133 polypeptide=Potri.001G061301.1.p locus=Potri.001G061301 ID=Potri.001G061301.1.v4.1 annot-version=v4.1
MAKEKDSGSTAVVEGACSSYYVLCAALLTEHVLQKLHKLWSLVPVELVKVTAEVAKFHLINKCWNVLPLLLVVKYLYFVAAYVATPRKESFTLWLMQSHA
LIRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G061301
[exp]
0 1
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134425
[exp]
12.00 0.9461
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.008G041400
[exp]
18.70 0.9496 Pt-MLO12.2
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.002G076100
[exp]
21.72 0.9464
AT1G18140 LAC1, ATLAC1 laccase 1 (.1) Potri.015G040700
[exp]
21.79 0.9328
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134500
[exp]
22.36 0.9445
AT5G39040 AtALS1, ABCB27,... ARABIDOPSIS THALIANA TRANSPORT... Potri.015G059800
[exp]
22.84 0.9285
AT1G28710 Nucleotide-diphospho-sugar tra... Potri.012G112600
[exp]
22.89 0.9516
AT1G22370 ATUGT85A5 UDP-glucosyl transferase 85A5 ... Potri.004G172700
[exp]
25.29 0.9269
AT5G04500 glycosyltransferase family pro... Potri.010G232700
[exp]
26.60 0.9476
AT3G49200 O-acyltransferase (WSD1-like) ... Potri.001G304600
[exp]
30.98 0.9192

Potri.001G061301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.