Plant FIBer expression Database

Potri.001G061500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33490 479 / 3e-162 hydroxyproline-rich glycoprotein family protein (.1)
AT5G41100 322 / 1e-101 unknown protein
AT3G26910 320 / 9e-101 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G166300
[exp]
858 / 0 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1)
Potri.017G063000
[exp]
503 / 1e-170 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1)
Potri.001G324800
[exp]
497 / 7e-169 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002580
[exp]
483 / 3e-163 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1)
Lus10001808
[exp]
468 / 3e-155 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1)
Lus10032001
[exp]
453 / 1e-151 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1)
Lus10035172
[exp]
405 / 6e-133 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G061500.1 pacid=42790733 polypeptide=Potri.001G061500.1.p locus=Potri.001G061500 ID=Potri.001G061500.1.v4.1 annot-version=v4.1
ATGAAATCATCCCTGAGGAAACTGAGAGGACTTGCTGCCTTGCACAAACATGGACATGGTGGTGATCATAAAGACCGAAGGGATCTTCTCTCTCTCGCTC
AATTAGACGAGCTCGCTAAAGCTTATCGGGACATGCAGGACATGAAAGATTGCTATGATAGCTTACTTTCTGCTGCGTCTGCGACTGCCAATTGTGCCTA
TGAATTCTCAGAATCAGTGCGTGAAATGGGTGCTTGCCTTCTCGAGAAAACTGCATCGAATGATGATGAAGAAGGCGGTAGAGTCTTGCTGATGCTGGGA
AAAGTGCAATTTGAACTTGAGAAACTTGTTGACTGCTATCGATCCCACATCCACAAGACGATCATAAGCCCGTCAGAGTCTCTTCTGAATGAGCTTCAAA
CAGTTGAGGAGATGAAGCGACTGTGTGATGAGAAAAGAGATGTATATGAGTACATGGTGAGACAGAAAGAAAAAGGGCGGGGAAGAAGTGGAAAGGGAGA
GAGTGTATCTATGCAGCAAGTACAAGCAGCTCATGATGAATATGATGAGGAGGCAACTTTATTTGTTTTTCGTATTAAATCTCTGAAGCAAGGACAATCT
CGCAGTCTTCTAACACAGGCAGCTCGGCACCACGCTGCTCAGTTATACTTTTTTAAGAAGGCTCTTAAATCTCTTGAAGCTGTTGAGCCGCATGTCAAAT
TGGTCACAGAACGGCAGCATATAGATTACCACTTTAGTGGACTTGATGATGATGGGAGAGATGATGTTGATGATGATGATGAAGATTATGATGATGCCAA
TGATGATGGAGAATTGAGCTTTGACTATGGACAAAATGACCAGGAACAAGAAGTTTCCACACCAAAAAAGTCGATGGAGTTGGATTCGGCGGGTGTTACA
TTTCCCCAAGTTGCGACATTGGAGATGGCAAAGGAAAATCTAGATAGAAGTTACAGGACAACGTCTTCATTTAAAGGAGAACTTCAGACAGGCACCCAAT
CAGCTCCACTTTTTGCTGAAACTACATCTGATCCAGCTGGAAAAACAAAAAAACTGACGCCATCATCCACACGAAAGCTCAACACTTATGTTTTGCCTAC
CCCAGCGGACCCTAAGAGTTCAAATCCTACAGGATCTGGTAGCCCGGTTTCTGGAACACTAAAGATAAGTTTGAGCAGCCGCACACCCAATTTGTGGCAT
TCATCCCCTCTCGACCAAAAAAAAATTGAGAAGTTATTAGGAGTTGAAATGTCTAACAAACCCACTACTAAAAATTCACAGTCAGTACTCAAGGAGAGCA
ACAACAACACCGCATCCACCCGATTACCTCCTCCTCTAGCTGATGGACACCTGTTTTCACGGCTTGAACCATTGGCTGCTTTTGATTCTAAGAAAACCAG
AAGATATGCCTTTTCTGGTCCTATTACAAGCAAGCCATTGTCTACCAAGCCGGTCTCAGCAGAACATCCCCAATTATTCTCTGGACCCCTTCTGCGAAAT
CCAGCGACTCAATTATTATCACCTCCAAAAGTGTCTCCAATAATATCACCAAAAGTATCTCCTAGTGCTTCCCCTACTTTTGTGTCCCCGCCCAAAATCA
GTGAGTTACATGAGCTTCCTAGACCCCCACTCAGTTCAACCTCCAAGTCTCCAAGGGCTGAAGGTTTGGTTGGTCATTCAACCCCATTATTGCCCAAAGG
TAGCATGCATCCTGGAACAAGAAAAACACCAGCGTCAAATGTAGCATCTCAACTGCCCACACCTTCTCAAGTTGTCACTCGCAGTTTTTCAATACCCTCT
AGAAGTCGTAGAATAATGGTCGCTCAGAGTTCAGGGATTGCTGAGGATGTTGCCTCACCTCCTCTAACCCCGATATCTTTATGTAACAACTACCCATCAT
CCACCGGTTCCCATACTGTCAATCAGACGGTTCAAATCAGAGGTGCCGATTGA
AA sequence
>Potri.001G061500.1 pacid=42790733 polypeptide=Potri.001G061500.1.p locus=Potri.001G061500 ID=Potri.001G061500.1.v4.1 annot-version=v4.1
MKSSLRKLRGLAALHKHGHGGDHKDRRDLLSLAQLDELAKAYRDMQDMKDCYDSLLSAASATANCAYEFSESVREMGACLLEKTASNDDEEGGRVLLMLG
KVQFELEKLVDCYRSHIHKTIISPSESLLNELQTVEEMKRLCDEKRDVYEYMVRQKEKGRGRSGKGESVSMQQVQAAHDEYDEEATLFVFRIKSLKQGQS
RSLLTQAARHHAAQLYFFKKALKSLEAVEPHVKLVTERQHIDYHFSGLDDDGRDDVDDDDEDYDDANDDGELSFDYGQNDQEQEVSTPKKSMELDSAGVT
FPQVATLEMAKENLDRSYRTTSSFKGELQTGTQSAPLFAETTSDPAGKTKKLTPSSTRKLNTYVLPTPADPKSSNPTGSGSPVSGTLKISLSSRTPNLWH
SSPLDQKKIEKLLGVEMSNKPTTKNSQSVLKESNNNTASTRLPPPLADGHLFSRLEPLAAFDSKKTRRYAFSGPITSKPLSTKPVSAEHPQLFSGPLLRN
PATQLLSPPKVSPIISPKVSPSASPTFVSPPKISELHELPRPPLSSTSKSPRAEGLVGHSTPLLPKGSMHPGTRKTPASNVASQLPTPSQVVTRSFSIPS
RSRRIMVAQSSGIAEDVASPPLTPISLCNNYPSSTGSHTVNQTVQIRGAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33490 hydroxyproline-rich glycoprote... Potri.001G061500
[exp]
0 1
AT2G47350 HIT zinc finger ;PAPA-1-like c... Potri.014G119600
[exp]
3.16 0.7585
AT5G36930 Disease resistance protein (TI... Potri.006G283800
[exp]
4.47 0.7880
AT2G36490 DML1, ROS1 REPRESSOR OF SILENCING1, demet... Potri.006G116000
[exp]
6.63 0.7922
AT5G63260 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.015G089100
[exp]
7.74 0.7345
Potri.008G085150
[exp]
7.93 0.7813
AT3G56120 S-adenosyl-L-methionine-depend... Potri.018G072200
[exp]
12.24 0.7558
AT4G27220 NB-ARC domain-containing disea... Potri.018G145582
[exp]
12.68 0.7553
AT3G50880 DNA glycosylase superfamily pr... Potri.007G024200
[exp]
13.85 0.7359
AT3G14470 NB-ARC domain-containing disea... Potri.004G169800
[exp]
17.49 0.7506
AT3G14470 NB-ARC domain-containing disea... Potri.004G170232
[exp]
18.86 0.7624

Potri.001G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.