Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21090 273 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) AT3G43740 270 / 3e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G71830 231 / 2e-72 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 225 / 3e-70 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 217 / 5e-67 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 211 / 5e-65 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 197 / 6e-60 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 129 / 2e-34 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 126 / 2e-33 NIK3 NSP-interacting kinase 3 (.1) AT4G30520 124 / 1e-32 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166200 [exp] 383 / 4e-137 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.009G018800 [exp] 271 / 3e-93 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.001G219500 [exp] 266 / 8e-91 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) Potri.001G296500 [exp] 249 / 2e-84 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 238 / 5e-80 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G083300 [exp] 228 / 2e-71 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.013G117200 [exp] 226 / 1e-70 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G082400 [exp] 226 / 1e-70 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.019G087700 [exp] 224 / 6e-70 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002579 [exp] 347 / 1e-122 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10001807 [exp] 282 / 3e-97 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10002117 [exp] 243 / 1e-81 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10013902 [exp] 246 / 1e-75 AT1G49870 454 / 2e-145 unknown protein Lus10020962 [exp] 224 / 5e-70 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10026751 [exp] 204 / 7e-67 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10004958 [exp] 196 / 1e-63 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10042755 [exp] 189 / 1e-60 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10028716 [exp] 191 / 2e-57 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 156 / 1e-44 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G061600.1 pacid=42789173 polypeptide=Potri.001G061600.1.p locus=Potri.001G061600 ID=Potri.001G061600.1.v4.1 annot-version=v4.1 ATGGCAAGCAGCACCGCGTTTCATCTTCTTGTTCTTTTTCTTCTATCAACCATTCAGTCACCTACAAATGCAAATTTGGAAGGGGATGCTTTGTACGCTT TGAGGAGAGCAGTGAAGGATCCTGGACATGTTCTCCAGAGCTGGGATCCAACCCTGACAGATCCATGTACTTGGTTCCACGTTACTTGTGACGGTGATAA TCGGGTTACCCGACTAGACCTTGGAAATGCGAAGCTTTCGGGCAGTCTAGTTCCTGAGTTGGGGAAGCTCGTGGGTCTTCAGTATCTGGAACTGTACATG AATGAGCTGGTGGGTCCTATACCAAGGGAACTTGGAAACCTGAAGAGTCTTGTGAGCTTGGATCTGTACCACAATAACCTCACTGGGACCATTCCTGCTT CACTTTCTAAGCTATCCAATCTTAAATTCCTGAGACTGAACGGTAACAGACTGACTGGAAGGATACCAAGAGAACTTACCAAATTGGACAGCCTAAAGAT CCTTGACGTATCAAACAATGATTTATGTGGCACCATACCTACCTCAGGTTCTTTCTCCAAGTTGACAGAGGAAAGTTTTGTGAATAACTCAAGACTGGAA GGACCAGAACTGGTGGGATTTGTGAGATACAATGCTGCTGGAAGTTGTAAATGA
AA sequence Show only first row Show all	>Potri.001G061600.1 pacid=42789173 polypeptide=Potri.001G061600.1.p locus=Potri.001G061600 ID=Potri.001G061600.1.v4.1 annot-version=v4.1 MASSTAFHLLVLFLLSTIQSPTNANLEGDALYALRRAVKDPGHVLQSWDPTLTDPCTWFHVTCDGDNRVTRLDLGNAKLSGSLVPELGKLVGLQYLELYM NELVGPIPRELGNLKSLVSLDLYHNNLTGTIPASLSKLSNLKFLRLNGNRLTGRIPRELTKLDSLKILDVSNNDLCGTIPTSGSFSKLTEESFVNNSRLE GPELVGFVRYNAAGSCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G061600 [exp]	0	1
AT5G02140			Pathogenesis-related thaumatin...		Potri.006G088100 [exp]	8.18	0.9373
AT2G40230			HXXXD-type acyl-transferase fa...		Potri.008G071200 [exp]	8.83	0.8960
AT4G37840		HKL3	hexokinase-like 3 (.1)		Potri.007G009300 [exp]	9.59	0.9324
					Potri.003G156000 [exp]	10.72	0.9215
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.007G009200 [exp]	13.56	0.8721
AT5G23100			Protein of unknown function, D...		Potri.015G053000 [exp]	13.63	0.9282
AT5G02140			Pathogenesis-related thaumatin...		Potri.010G200800 [exp]	14.07	0.8712
AT2G35585			unknown protein		Potri.010G101500 [exp]	15.09	0.9171
AT3G14240			Subtilase family protein (.1)		Potri.003G071800 [exp]	16.00	0.8583
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.010G195100 [exp]	17.20	0.8453

Compare expression of checked genes

Potri.001G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.