Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13190 222 / 3e-76 AtGILP GSH-induced LITAF domain protein, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165900 [exp] 269 / 1e-94 AT5G13190 219 / 4e-75 GSH-induced LITAF domain protein, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001805 [exp] 241 / 9e-84 AT5G13190 211 / 8e-72 GSH-induced LITAF domain protein, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10601 [poplar] [flax] zf-LITAF-like LITAF-like zinc ribbon domain
Representative CDS sequence Show only first row Show all	>Potri.001G061900.1 pacid=42788711 polypeptide=Potri.001G061900.1.p locus=Potri.001G061900 ID=Potri.001G061900.1.v4.1 annot-version=v4.1 ATGGGGCAAAAGGACGAACCTGTCATCGGAGTTCCTTACTACGCTGGGCAGAACCCGTACCAAGCCGGAGCTATACCGCCAAACGCAATCGTCGGCGATC CAAGGGGGATCCCGATTCAACAGACTATGTATCGCGACACTCCTGCTCCTTTTAACTGCGTCTACTGTGGTAATTCTGGCGTTACCGTCGTTAGATCAAA GCCTAGTTTGGCAGCTGTTGTTGGTTGCATGATGCCTTTGATGGTTGGATTTTGCTTTCTTTGCCCTTCTATGGACTGCCTCTGGCACAAGCATCACTAC TGCCCAAGCTGCAAAGAAAAGGTTGCCGACTTTGAGAAATCAGATCCTTGTGCGGTGATGGATCCTCCCCACTGGACACAGGAGAGCTTCGCTTTGCCTG CATGA
AA sequence Show only first row Show all	>Potri.001G061900.1 pacid=42788711 polypeptide=Potri.001G061900.1.p locus=Potri.001G061900 ID=Potri.001G061900.1.v4.1 annot-version=v4.1 MGQKDEPVIGVPYYAGQNPYQAGAIPPNAIVGDPRGIPIQQTMYRDTPAPFNCVYCGNSGVTVVRSKPSLAAVVGCMMPLMVGFCFLCPSMDCLWHKHHY CPSCKEKVADFEKSDPCAVMDPPHWTQESFALPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	0	1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	1.73	0.8761
AT3G04860			Plant protein of unknown funct...		Potri.005G050000 [exp]	2.64	0.8318
AT1G05760		RTM1	restricted tev movement 1, Man...		Potri.010G144900 [exp]	2.82	0.8515	Pt-RTM1.1
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G116900 [exp]	2.82	0.8625
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.005G257700 [exp]	3.00	0.8556
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	5.29	0.8061
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	5.47	0.8226
AT2G23690			unknown protein		Potri.009G110600 [exp]	5.47	0.8048
AT3G14420			Aldolase-type TIM barrel famil...		Potri.004G065200 [exp]	6.48	0.8347
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.015G072400 [exp]	7.34	0.7874

Compare expression of checked genes

Potri.001G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.