Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004401 [exp] 330 / 1e-116 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.019G061550 [exp] 294 / 3e-98 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165360 [exp] 139 / 1e-43 ND / Potri.001G165480 [exp] 40 / 0.0003 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G062301.1 pacid=42789635 polypeptide=Potri.001G062301.1.p locus=Potri.001G062301 ID=Potri.001G062301.1.v4.1 annot-version=v4.1 ATGGCTCTACGTATAAAACAGATTAAAAAATATAACTTCTACCCTTCATTACGAGCTAGGGCCTGTCGAGTTTGGATTGCTAAATTTAATGGTCAGCCAA GCAGTTTTAATTGTGTTTTTGTTGACAATCAGGGTGGAGCTATTCAAGCTTTAGCTAAAACAAGGGATCTCCCAACATTTGCAGCAACAATTATTGAAGG AAATCACTATGAAATCAAAGGATTCTATACTTATGAAAACACAGTAGTAAACACAGTTGCTGCCCATGATGCTGTAATTGATCTCAAATCTAACACAAAA ATTACAGGCATTGAAGCTATTACACCTCATGTTCCTAGATACTACTTCAATTTTATTGACTATGCACATATTTTGACCAAGTCAAAAGGCTCCAGAATTC TTACAGATGTCCTTGGAAGACTTAAAGCATTGCAGCCACTTGAACAAGTTATGGTTCGTGGACAGACGCTCGAAAATAAGAGAGAATTCATGATTGAGAA CATTCGGTGA
AA sequence Show only first row Show all	>Potri.001G062301.1 pacid=42789635 polypeptide=Potri.001G062301.1.p locus=Potri.001G062301 ID=Potri.001G062301.1.v4.1 annot-version=v4.1 MALRIKQIKKYNFYPSLRARACRVWIAKFNGQPSSFNCVFVDNQGGAIQALAKTRDLPTFAATIIEGNHYEIKGFYTYENTVVNTVAAHDAVIDLKSNTK ITGIEAITPHVPRYYFNFIDYAHILTKSKGSRILTDVLGRLKALQPLEQVMVRGQTLENKREFMIENIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G062301 [exp]	0	1
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.001G261201 [exp]	4.00	0.8484
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Potri.008G126100 [exp]	6.48	0.7871
AT1G65780			P-loop containing nucleoside t...		Potri.017G140501 [exp]	11.40	0.8077
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	14.14	0.8005
					Potri.005G161366 [exp]	20.19	0.7793
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G117302 [exp]	22.44	0.8257
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Potri.009G041000 [exp]	22.71	0.7975
AT3G63088		RTFL14, DVL14	DEVIL 14, ROTUNDIFOLIA like 14...		Potri.008G202000 [exp]	42.89	0.7714
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432366 [exp]	60.49	0.7877
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	89.73	0.7276

Compare expression of checked genes

Potri.001G062301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.