Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13220 171 / 5e-54 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G19180 67 / 8e-14 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT5G20900 65 / 5e-13 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G74950 64 / 1e-12 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT3G43440 56 / 6e-10 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G70700 54 / 1e-08 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G72450 51 / 1e-07 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) AT1G30135 47 / 8e-07 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8 (.1) AT3G17860 45 / 8e-06 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G17380 45 / 1e-05 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165000 [exp] 295 / 4e-103 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.003G068900 [exp] 68 / 9e-14 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G217200 [exp] 66 / 5e-13 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.018G047100 [exp] 63 / 2e-12 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G139400 [exp] 61 / 3e-11 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.001G166200 [exp] 56 / 2e-09 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.006G023301 [exp] 50 / 5e-08 AT1G30135 73 / 2e-17 jasmonate-zim-domain protein 8 (.1) Potri.011G083900 [exp] 45 / 5e-06 AT1G30135 69 / 1e-15 jasmonate-zim-domain protein 8 (.1) Potri.002G048500 [exp] 40 / 0.0005 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002576 [exp] 119 / 7e-34 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10001803 [exp] 119 / 2e-33 AT5G13220 100 / 1e-26 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10039911 [exp] 61 / 6e-11 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 59 / 2e-10 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10008129 [exp] 51 / 9e-08 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013166 [exp] 51 / 1e-07 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10035804 [exp] 50 / 2e-07 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10014700 [exp] 48 / 1e-06 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10036584 [exp] 44 / 3e-05 AT1G74950 64 / 9e-12 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10011929 [exp] 43 / 4e-05 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.001G062500.2 pacid=42788130 polypeptide=Potri.001G062500.2.p locus=Potri.001G062500 ID=Potri.001G062500.2.v4.1 annot-version=v4.1 ATGTCCAGAGCAGCAGCTGTTGAACTCGATTTTTTTGCCATGGGTAAAGAGAACAAGTCGTCACCTTCCAAGTCCAAGTTTCTTAATCGCCAAAGAAGCT TTCGAGATATTCAGAGTGCCATTTCGAAAATAAATCCTGAGCTTTTAAAATCCGTGATTGCCTCTGGTTCTGCTGCCACCAAGACTACTCCGGAAAATGG CAATCAGTTCTCAAACAAGTCATTCTCTGTGCCTTCCACTCCTAAACAGGAACAGCCTTCATTTCCTGTTCTCCCTCTCTATTCTCCTCTCCCAAGGCCT AATATGATGATCCCTCCCGAAACCGCCCCCTTGACTATTTTCTACAATGGAACCGTAGCCGTTTTCAATGTCCCTCGAGACAAGGCGGAGAACATTTTGA AGCTTGCCGAGAAGAGAATTTCCAAGACCAGTGCTGAACCAATGACTGATCCAAAAACTGATCAACAACAGCTTTTTGAGAGCCTTGATGGAGATCTGCC AATTGCCAGGAGGAAATCACTGCAGAGGTTTCTGGAGAAAAGAAAGGGGAGGTTGACTTCGGTGTCCCCGTATGTTTGCAACACCTAA
AA sequence Show only first row Show all	>Potri.001G062500.2 pacid=42788130 polypeptide=Potri.001G062500.2.p locus=Potri.001G062500 ID=Potri.001G062500.2.v4.1 annot-version=v4.1 MSRAAAVELDFFAMGKENKSSPSKSKFLNRQRSFRDIQSAISKINPELLKSVIASGSAATKTTPENGNQFSNKSFSVPSTPKQEQPSFPVLPLYSPLPRP NMMIPPETAPLTIFYNGTVAVFNVPRDKAENILKLAEKRISKTSAEPMTDPKTDQQQLFESLDGDLPIARRKSLQRFLEKRKGRLTSVSPYVCNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	0	1
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	1.00	0.9624
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	1.73	0.9524
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	2.00	0.9469
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	2.00	0.9547	CYP71AN3
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.007G096500 [exp]	2.44	0.9403
					Potri.001G371850 [exp]	4.89	0.9377
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	5.09	0.9153
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.006G139400 [exp]	5.47	0.9445
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.016G137400 [exp]	5.91	0.9402
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	9.16	0.8954

Compare expression of checked genes

Potri.001G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.