Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13250 202 / 1e-61 RING finger protein (.1) AT1G28080 126 / 1e-33 RING finger protein (.1) AT1G06770 81 / 6e-17 DRIP1 DREB2A-interacting protein 1 (.1.2) AT2G30580 80 / 3e-16 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT3G23060 66 / 1e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164800 [exp] 559 / 0 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.013G042000 [exp] 96 / 2e-21 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 93 / 2e-20 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.004G137200 [exp] 88 / 3e-19 AT5G13250 92 / 9e-21 RING finger protein (.1) Potri.005G219000 [exp] 79 / 7e-16 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 76 / 9e-15 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 75 / 2e-14 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 71 / 3e-13 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002575 [exp] 92 / 2e-20 AT5G13250 90 / 9e-20 RING finger protein (.1) Lus10021993 [exp] 77 / 2e-15 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 77 / 3e-15 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10001802 [exp] 70 / 4e-13 AT5G13250 66 / 9e-12 RING finger protein (.1) Lus10033860 [exp] 67 / 5e-12 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 66 / 2e-11 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 0 / 1 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF16207 [poplar] [flax] RAWUL RAWUL domain RING finger- and WD40-associated ubiquitin-like
Representative CDS sequence Show only first row Show all	>Potri.001G062700.2 pacid=42789944 polypeptide=Potri.001G062700.2.p locus=Potri.001G062700 ID=Potri.001G062700.2.v4.1 annot-version=v4.1 ATGACCATGGTTCCTGCTCGAAGTCTTTCTAAACAACAACAGCAACAGCATCAACTTTGTTATGGTAGTTATTTTGGTGGAGGTACTAGTGCATATAATG AGAGTTTTGGTCTTATGAGCCGATTAGAAGGTTATGACTCTTGTGTTAGTGAAGCTTGCTTATTAGGATCTGATCTAGTGGTGGCTAATATTCCCATGGC TGAAGATGAATCAAGAACTAATAGTGTTAATAATGAAGCTGGCTCAAGCTCAAAAGATGTTCAAGAAGAGAGAGATGAAGGGTGGCTCCAATTGAGTATA GGGGGTCAAACAACAACGACAACAACACCAACAAGCCATGAGAGCAAGCACTATCATCATCATCATCATCAACAACAACAACAACTAGTACTTGATCCTA CAACTAGAAGAGGAGGGTTGATTGAGCTTGATCTACTACCAGGTAGCATTAGTAGTATTTCACATCAAGCAAGACCTTTGAGTACTCCTATGTTTCATGT TCCTGATTTTAGAACTCCTCCAAGGCCAGTCATGAACATTGCTGCAAGTCATGCCACTAATTTTGGCACTACATCTTTATTCTTTCAACACCATCCAGCA GCAACTAGCTCAACCTATCCTCTTCATCAAGAGATAAACTGGCCATTTAGGCCTATGTTGCATAATATAGCGACCGCCTCATCTTCATATTCTCCGTCGT CCTCTTCTTCTTCTTTGATGCCATTGGGGTCCTATTTTTCACGTCCGTTCCAAGTAAATAGTGGCATGGATGTTGCAGGACCGAGTTCCGACTTTAGAGT AATTGATCCTCCAAGAAGACCCCATTCTGGCATTTGGTTTTTACTACAAGCGTCTCAAAATCAAACGAAAGAACCCTTCTTGCCTCAAATATCCAAGAGC TACCTGAGAATCAAGGATGGAAGGATGACAGTTCGGTTATTAATGAAGTATCTGGTTAACAAGCTGGGACTGGATAGCGAATCAGAGCAGATAGAGATAA CCTGTAGAGGGCAACAGCTTGTACCTTTCTTGACGTTGCAGCATGTAAGGGATAACATATGGAGCCCAAGAGATGCACTCACTTTGCTTCCAGAATCCTC AACCACAGATCATGTCATGGTGCTGCACTATGGTAGAAGTGCTTAA
AA sequence Show only first row Show all	>Potri.001G062700.2 pacid=42789944 polypeptide=Potri.001G062700.2.p locus=Potri.001G062700 ID=Potri.001G062700.2.v4.1 annot-version=v4.1 MTMVPARSLSKQQQQQHQLCYGSYFGGGTSAYNESFGLMSRLEGYDSCVSEACLLGSDLVVANIPMAEDESRTNSVNNEAGSSSKDVQEERDEGWLQLSI GGQTTTTTTPTSHESKHYHHHHHQQQQQLVLDPTTRRGGLIELDLLPGSISSISHQARPLSTPMFHVPDFRTPPRPVMNIAASHATNFGTTSLFFQHHPA ATSSTYPLHQEINWPFRPMLHNIATASSSYSPSSSSSSLMPLGSYFSRPFQVNSGMDVAGPSSDFRVIDPPRRPHSGIWFLLQASQNQTKEPFLPQISKS YLRIKDGRMTVRLLMKYLVNKLGLDSESEQIEITCRGQQLVPFLTLQHVRDNIWSPRDALTLLPESSTTDHVMVLHYGRSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	0	1
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	2.00	0.8165
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.015G141400 [exp]	2.44	0.7524
AT1G80610			unknown protein		Potri.017G053900 [exp]	3.74	0.7131
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.005G049800 [exp]	4.89	0.7160
AT5G65170			VQ motif-containing protein (....		Potri.005G166100 [exp]	4.89	0.7470
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.003G195300 [exp]	5.19	0.6988
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.019G018100 [exp]	9.16	0.6919	PPCK2.2
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	10.24	0.6872
AT1G29195			unknown protein		Potri.004G057500 [exp]	10.81	0.6546
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	11.48	0.7710

Compare expression of checked genes

Potri.001G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.