Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58190 296 / 7e-87 AtRLP9 receptor like protein 9 (.1.2) AT5G49290 287 / 2e-84 ATRLP56 receptor like protein 56 (.1) AT1G07390 277 / 1e-80 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74180 278 / 2e-80 AtRLP14 receptor like protein 14 (.1) AT1G54470 273 / 9e-79 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74190 271 / 4e-78 AtRLP15 receptor like protein 15 (.1) AT2G25470 266 / 2e-76 AtRLP21 receptor like protein 21 (.1) AT1G74170 261 / 2e-74 AtRLP13 receptor like protein 13 (.1) AT4G04220 248 / 1e-70 AtRLP46 receptor like protein 46 (.1) AT2G33020 231 / 1e-64 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G063909 [exp] 1318 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.018G145512 [exp] 1191 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.018G144300 [exp] 1183 / 0 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.018G145516 [exp] 1182 / 0 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.001G065327 [exp] 1165 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.003G041600 [exp] 1159 / 0 AT1G74170 333 / 2e-98 receptor like protein 13 (.1) Potri.018G148000 [exp] 1147 / 0 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G144700 [exp] 1115 / 0 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.003G041400 [exp] 1101 / 0 AT1G74190 334 / 1e-99 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 407 / 1e-129 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 403 / 9e-127 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 346 / 7e-106 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016384 [exp] 259 / 2e-73 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 257 / 9e-73 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002755 [exp] 256 / 2e-72 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 251 / 7e-72 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 251 / 1e-70 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 246 / 4e-69 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 241 / 2e-67 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G063900.1 pacid=42791544 polypeptide=Potri.001G063900.1.p locus=Potri.001G063900 ID=Potri.001G063900.1.v4.1 annot-version=v4.1 ATGTTTCTTCCTTTTCAACAACTCAACGCTCTCCACTTGTGGGGTAATCGTATAGCTGGTTGGGTTGAGAAGAAAGGTCCAAGCAACTTGAGGAGTCTAT GGCTAGAAAATATCACAACCTATGGAAGTAGCTTCCAGTTACTGCAATCATTACGAGCATTCCCAAACCTCACGAAACTTTCTATGGGATACAATGATTT TATAGGAAGAATATTAAGTGACGAGTTGCAAAATTTAAGCTCCTTGCAAAGTTTGTATCTGGACGGTTGTTCTCTAGATGAATACTCTCTTCAAAGCCTT GGAGCACTGTCTTCTCTAAAAAACATGTCATTACAAGCACTCAATGGCATTGTACTTTCTAGAGGCTTCCTTGATCTCAAGAACTTGGAATACTTGGATT TGAGTTACAATACTCTCAATAATAGCATCTTCCAAGCCATCGGAACAATGACCTCTCTTAGAACTTTGATTTTGCACAGCTGCAGACTAGATGGTCGAAT ACCTACAACCCAGGGCTTCTTTAATCTCAAGAACTTGGAATTCTTGGATTTAAGTTCCAATACTCTCAGTAACAACATCTTACAAACCATCAGAACGATG CCCTCTCTCAAAACTTTATGGTTGCAGAATTGTAGTCTAAATGGCCAATTACCTACAACCCAAGGCCTATGTGACTTAAATCATCTTCAAGAGCTATATA TGAATGACAATGATCTAAGTGGTTTCTTGCCTCCGTGTCTGGCAAATATGACTTCCCTTCAACGACTATATCTCTCTTCCAATCACTTGAAGATACCTAT GTCATTGAGCCCGTTATACAACCTTTCAAAACTCAAGTCTTTTTATGGTTCAGGGAATGAAATATACGCAGAAGAAGATGATCATAATCTCACCCCAAAG TTCCAGTTAGAGTCCCTCTCTTTGAGCAATGGTGGACAAAATACGAGAGCATTTCCCAAGTTCCTTTACCATCAGTTCAGCCTACAATCTTTGGATCTTA CAAACATCCAAATAAAGGGAGAGTTTCCAAATTGGTTGATTGAGAACAACACATACCTCAAACTTCTTTCTTTAGAAAACTGTTCTCTTTCAGGTCCATT CTTGTTGCCAAAGAGTTCTCATGTGAATTTGTCATTCCTAAGTATATCAATGAATCACTTCCAAGGACAAATCCCTTCAGAAATTGGAGCTCATTTTTCA GGGTTAGAAGTTTTATTGATGTCTGATAATGGTTTCAATGGAAGCATTCCTTCCTCATTAGGTAACATGAGCTTGATGTACGAGTTAGACTTGTCCAACA ACAGTTTGCAAGGGCAAATCCCTGGATGGATTGGGAATATGTCTTCTCTTGAATTCTTGGACCTATCAAGGAACAATTTATCTGGTCCTTTACCACCTAG ATTCGGCACTTCTTCAAAATTAAGAGATGTTTTTTTGTCTAGAAATAGGTTGCAAGGACCGATCGCAATGGCATTTTCTGACTCCTCTGAGATATTCGCA TTAGATCTTTCCCATAATGATTTAACTGGTAGAATTCCAGAATGGATTGACAGGCTATCTAACTTGAGATTTCTACTCTTGAGTTATAACAATCTTGAAG GTGAAATCCCAATTCGATTATGCAGGTTGGACCAATTAACCGTGATTGATCTATCTCACAATTATCTTTCTGGTAACATCCTCTCTTGGATGATATCTAC TCATCCTTTCCCTATTCAATACAATTCCCATTATTCTATGTTCTCATCACAACAATCTTTCGAGTTTACAATAAAGAATGTATCCTTTCCTTATAAAGGA AGCATTATCCAGTACTTAACAGGAATTGATTTCTCATGCAACAATTTCACAGGAGAGATTCCTCCTGAAATTGGAAACCTCAACAAGATCAAGGCATTGA ACCTTTCGCACAACAGTTTGACTGGACCAATTCAATCAACATTTTCAAATTTAAAGGAAATAGAGAGTTTGGATCTTTCCTACAACAAACTGGATGGAGA AATCCCACCTCGACTTATTGAACTATTTTCTCTAGAATTTTTCAGTGTGACACACAATAATCTGTCCGGCAAGACTCCTGCGAGAGTTGCACAATTTGCC ACGTTTGAGGAGAGCTGCTACAAAGACAACCTTTTTCTTTGTGGAGAACCGCTAACCAAAATATGTGGTGCGGCTATGCCATCATCATCAACGCCAACTT CAAGGAACAATGAAGATGATGGTGGCTTCATGGATATAGAGATTTTCTATGTGAGCTTTGGGGTTGCATACATCATGGTGCTGCTGGTGATAGGTGCAGT TCTGCATATAAATCCATATTGGCGATGA
AA sequence Show only first row Show all	>Potri.001G063900.1 pacid=42791544 polypeptide=Potri.001G063900.1.p locus=Potri.001G063900 ID=Potri.001G063900.1.v4.1 annot-version=v4.1 MFLPFQQLNALHLWGNRIAGWVEKKGPSNLRSLWLENITTYGSSFQLLQSLRAFPNLTKLSMGYNDFIGRILSDELQNLSSLQSLYLDGCSLDEYSLQSL GALSSLKNMSLQALNGIVLSRGFLDLKNLEYLDLSYNTLNNSIFQAIGTMTSLRTLILHSCRLDGRIPTTQGFFNLKNLEFLDLSSNTLSNNILQTIRTM PSLKTLWLQNCSLNGQLPTTQGLCDLNHLQELYMNDNDLSGFLPPCLANMTSLQRLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEIYAEEDDHNLTPK FQLESLSLSNGGQNTRAFPKFLYHQFSLQSLDLTNIQIKGEFPNWLIENNTYLKLLSLENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIPSEIGAHFS GLEVLLMSDNGFNGSIPSSLGNMSLMYELDLSNNSLQGQIPGWIGNMSSLEFLDLSRNNLSGPLPPRFGTSSKLRDVFLSRNRLQGPIAMAFSDSSEIFA LDLSHNDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNILSWMISTHPFPIQYNSHYSMFSSQQSFEFTIKNVSFPYKG SIIQYLTGIDFSCNNFTGEIPPEIGNLNKIKALNLSHNSLTGPIQSTFSNLKEIESLDLSYNKLDGEIPPRLIELFSLEFFSVTHNNLSGKTPARVAQFA TFEESCYKDNLFLCGEPLTKICGAAMPSSSTPTSRNNEDDGGFMDIEIFYVSFGVAYIMVLLVIGAVLHINPYWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063900 [exp]	0	1
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	1.00	0.9839
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.001G063909 [exp]	4.89	0.9756
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G145516 [exp]	4.89	0.9643
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065309 [exp]	5.47	0.9686
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	6.70	0.9703
AT4G03230			S-locus lectin protein kinase ...		Potri.019G120000 [exp]	7.07	0.9628
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G065300 [exp]	7.21	0.9528
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G012535 [exp]	7.74	0.9477
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	9.38	0.9582
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	9.79	0.9579

Compare expression of checked genes

Potri.001G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.