Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74180 347 / 6e-105 AtRLP14 receptor like protein 14 (.1) AT1G58190 346 / 3e-104 AtRLP9 receptor like protein 9 (.1.2) AT5G49290 338 / 5e-102 ATRLP56 receptor like protein 56 (.1) AT1G07390 328 / 1e-97 AtRLP1 receptor like protein 1 (.1.2.3) AT1G54470 304 / 3e-89 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT3G53240 301 / 1e-88 AtRLP45 receptor like protein 45 (.1) AT1G74170 279 / 7e-80 AtRLP13 receptor like protein 13 (.1) AT1G74190 276 / 6e-79 AtRLP15 receptor like protein 15 (.1) AT4G04220 239 / 8e-67 AtRLP46 receptor like protein 46 (.1) AT2G25470 239 / 3e-66 AtRLP21 receptor like protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G144700 [exp] 1405 / 0 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.018G145512 [exp] 1394 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G065327 [exp] 1389 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.001G063909 [exp] 1386 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.018G148000 [exp] 1376 / 0 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G145516 [exp] 1373 / 0 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.003G041400 [exp] 1367 / 0 AT1G74190 334 / 1e-99 receptor like protein 15 (.1) Potri.018G144300 [exp] 1357 / 0 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.001G065300 [exp] 1312 / 0 AT1G58190 390 / 4e-120 receptor like protein 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042381 [exp] 465 / 5e-149 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 427 / 7e-135 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10030068 [exp] 395 / 8e-124 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10003389 [exp] 251 / 5e-70 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10032335 [exp] 239 / 1e-66 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10039531 [exp] 239 / 7e-66 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 238 / 1e-65 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 236 / 1e-65 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 238 / 2e-65 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 235 / 1e-64 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G064600.6 pacid=42791739 polypeptide=Potri.001G064600.6.p locus=Potri.001G064600 ID=Potri.001G064600.6.v4.1 annot-version=v4.1 ATGGGTCTGTTCCTTCAGGTGTTCACGGTGTTAGTGATAACGGTTTCGCTGCAAGGATGGCTGCCTCGTGGTTGCTTGGAGGAAGAGAGGATCGCTCTGT TGCACCTCAAAGATTCTCTTAACTATCCCAACGGCACCTCCCTTCCCTCCTGGAGAATAGCCCACGCCAACTGCTGTGATTGGGAACATATTACCTGCAA CAGCAGTACAGATTGGTACTTAAATGCCTCCTTGTTTCTTCCTTTCCAACAACTCAACGGTGTCTACTTGTACGGTAATCGTATAGCTGGTTGGGTTGAG AACAAAGGTGGTTATGAGTTATCAAGATTGAGCAATTTGGAAATCCTTGACTTTGAATCTAATCGCTTCGATAATAGTATTTTATCATTTGTGAAGGAGT TTTCATCTCTTAAAGCATTATATTTAGGTCATAATAGACTGGAGGGAATAATAGATTTGAAAGAATCTCTGAGCAGCTTGGAGGCATTGAGTTTGGGCGG CAACAATATTAACAAATTGGTAGCCTCAAGAGGTCCAAGCAACTTGAGAACTCTATGGCTACAAAATATCACAACCTATAAAAGTAGCTTCCAGTTACTG CAATCATTACGAGCATTTCCAAACCTCACGACACTTCACCTGGAAGAAAATGATTTTAGAGGAAGAATATTAGATGATAAGTTGCAAAATTTAAGCTCAT TGGAAAATTTGTATCTAGATCAGTGTTCTCTAGATGAACACTCCCTTCAAAGCCTTGGAGCACTGCCTTCTCTAAAAAATCTATCATTGTATGCTCTCAG CAGCACTGTACTTTCTGAAGGCTTTCTTCATCTCAGGAACCTAAAATACTTGGATTTGAGCTATAATGCTCTCAACAATAGTATTTTTCAAACCATCGGC CTATGTGACTTAAATCATCTCCAAGTGCTATATATAGACGACAATGATCTTAGTGGTTTCTTGCCTCCGTGGCTGGCAAATTTGACTTCCCTTCAACTAC TAGATCTCTCTTCCAATCACTTGAAGATCCCTATGTCAATGAGCCCATTATACAACCTTTCAAAACTCAAGTCTTTTTATGGTTCAGGTAATGAAATATA TGCAGAAGAAGATCATCATAGTATGAGCCCAAAGTTCCAGTTAGAGTCCCTTTATTTGAGCAGTCGTGGACAAAGTGTAGGAGCATTTCCCAAGTTCCTT TACCACCAAGTGAACCTGCAATCTTTGGATCTTACAAACATCCAAATAAAGGGAGAGTTTCCAAATTGGTTGATTGAGAACAACACATACCTACAAGAAC TTCATTTAGAAAACTGTTCTCTTTCGGGTCCATTCTTGTTGCCAAAGAATTCTCATGTGAATTTATCATTCCTAAGTATATCCATGAATCACTTCCAAGG CCAAATCCCTTCAGAAATCGAAGCTCGTTTGCCAGGGTTAGAAGTTTTATTTATGTCTGACAATGGTTTCAATGGAAGCATTCCTTTCTCGTTGGGTAAC ATTAGCTCGCTGCAAGCATTCGACCTGTCAAACAACAATTTGCAAGGGCAAATCCCTGGATGGATTGGGAATATGTCTTCTCTTGAATTCTTGAACTTAT CAGGGAACAATTTCTCTGGTCGTTTACCACCTAGATTCAGCTCTTCTTCAAATTTGAGATATATTTTTTTGTCTAGAAATAAGTTGCAAGGGCCGATCGC AATGGCATTTTATGACTCCTTTGAGATATTCGCATTAGATCTTTCCCATAATAATTTAACTGGTACAATTCCAGAATGGATTGGCAGGCTATCGAACTTG AGATTTTTACTCTTGAGTTATAACAATCTTGAAGGTGAAATCCCAATTCAATTATCCAGATTGGACCACTTAACCTTGATTGATCTTTCTCACAATCACC TTTCTGGTAACATCCTCTTTTGGATGATATCTACTCATCCTTTCCCTCAACAATACAATTCTTATGGTTATGAATCCTCATCACACCAATCTTTTGAGTT TACAACGAAGAATGTATCCCTTTCTTATAGAGGAAGCATTATCCAGTACTTAACAGGAATTGATTTCTCATGCAACAATTTCACAGGAGAGATTCCTCCT GAAATTGGAAACCTCAACAAGATCAAGGCGTTGAACCTTTCGCACAACAGTTTGACTGGACCAATTCCACCAACATTTTCAAACTTAAAGGAAATAGAGA GCTTGGATCTTTCCTACAACAAATTGGATGGAGAAATCCCACCTCGACTTCCTGAACTATTTTCTCTAGAAGTTTTTAGTGTGGCTCATAATAATTTATC TGGTAAGACTCCTGCGAGAGTTGCACAGTTTGCCACGTTTGATGAGAGGTGCTACAAGGACAACCCTTTTCTTTGTGGAGAACCGCTACCCAAAATATGT GGTGCGGCTATGCCACCATCACCAACGCCAACTTCAACGAACAATGAAGATAATAGTGGCTTTATGGATATGGAGGTTTTCTATGTGACCTTTTGGGTTG TATACATCATGGTACTGCTGGTGATAGGTGCAGTTCTATACATAAATCCATATTGGCGACGAGCTTGGTTTCACTTTATTGAGGTGAGCATCAACAATTG CTATTATTTTCTAGTGGACAATCTTTCCATTTTATACAAGTTTGGGTTTTCATAG
AA sequence Show only first row Show all	>Potri.001G064600.6 pacid=42791739 polypeptide=Potri.001G064600.6.p locus=Potri.001G064600 ID=Potri.001G064600.6.v4.1 annot-version=v4.1 MGLFLQVFTVLVITVSLQGWLPRGCLEEERIALLHLKDSLNYPNGTSLPSWRIAHANCCDWEHITCNSSTDWYLNASLFLPFQQLNGVYLYGNRIAGWVE NKGGYELSRLSNLEILDFESNRFDNSILSFVKEFSSLKALYLGHNRLEGIIDLKESLSSLEALSLGGNNINKLVASRGPSNLRTLWLQNITTYKSSFQLL QSLRAFPNLTTLHLEENDFRGRILDDKLQNLSSLENLYLDQCSLDEHSLQSLGALPSLKNLSLYALSSTVLSEGFLHLRNLKYLDLSYNALNNSIFQTIG LCDLNHLQVLYIDDNDLSGFLPPWLANLTSLQLLDLSSNHLKIPMSMSPLYNLSKLKSFYGSGNEIYAEEDHHSMSPKFQLESLYLSSRGQSVGAFPKFL YHQVNLQSLDLTNIQIKGEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISMNHFQGQIPSEIEARLPGLEVLFMSDNGFNGSIPFSLGN ISSLQAFDLSNNNLQGQIPGWIGNMSSLEFLNLSGNNFSGRLPPRFSSSSNLRYIFLSRNKLQGPIAMAFYDSFEIFALDLSHNNLTGTIPEWIGRLSNL RFLLLSYNNLEGEIPIQLSRLDHLTLIDLSHNHLSGNILFWMISTHPFPQQYNSYGYESSSHQSFEFTTKNVSLSYRGSIIQYLTGIDFSCNNFTGEIPP EIGNLNKIKALNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLPELFSLEVFSVAHNNLSGKTPARVAQFATFDERCYKDNPFLCGEPLPKIC GAAMPPSPTPTSTNNEDNSGFMDMEVFYVTFWVVYIMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNLSILYKFGFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74180		AtRLP14	receptor like protein 14 (.1)		Potri.001G064600 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020000 [exp]	4.89	0.9339
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G144300 [exp]	5.74	0.9422
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019800 [exp]	6.00	0.9088
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G026308 [exp]	6.70	0.9345
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	7.74	0.9360
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020500 [exp]	8.00	0.9043
					Potri.010G008009 [exp]	11.40	0.9212
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	12.72	0.9223
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096100 [exp]	21.21	0.9013
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	23.91	0.9070

Compare expression of checked genes

Potri.001G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.