Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 81 / 1e-16 AtRLP15 receptor like protein 15 (.1) AT1G58190 79 / 3e-16 AtRLP9 receptor like protein 9 (.1.2) AT3G53240 75 / 6e-15 AtRLP45 receptor like protein 45 (.1) AT5G49290 74 / 2e-14 ATRLP56 receptor like protein 56 (.1) AT1G74180 73 / 2e-14 AtRLP14 receptor like protein 14 (.1) AT1G54470 72 / 4e-14 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G25470 68 / 2e-12 AtRLP21 receptor like protein 21 (.1) AT3G11080 62 / 1e-10 AtRLP35 receptor like protein 35 (.1) AT1G07390 56 / 2e-08 AtRLP1 receptor like protein 1 (.1.2.3) AT3G05660 52 / 2e-07 AtRLP33 receptor like protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G041700 [exp] 275 / 1e-86 AT1G58190 247 / 4e-69 receptor like protein 9 (.1.2) Potri.003G041600 [exp] 276 / 1e-85 AT1G74170 333 / 2e-98 receptor like protein 13 (.1) Potri.001G063909 [exp] 271 / 7e-84 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.018G145512 [exp] 269 / 3e-83 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G064900 [exp] 266 / 5e-82 AT1G07390 290 / 7e-83 receptor like protein 1 (.1.2.3) Potri.001G063300 [exp] 262 / 1e-80 AT1G07390 330 / 1e-96 receptor like protein 1 (.1.2.3) Potri.018G148000 [exp] 259 / 1e-79 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.001G065327 [exp] 257 / 6e-79 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.018G144800 [exp] 255 / 2e-78 AT1G74170 284 / 1e-81 receptor like protein 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027856 [exp] 85 / 3e-18 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10030068 [exp] 81 / 8e-17 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 79 / 5e-16 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10016339 [exp] 62 / 2e-10 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 59 / 2e-09 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 59 / 2e-09 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002757 [exp] 56 / 2e-09 AT2G34930 103 / 1e-26 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 57 / 1e-08 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 57 / 1e-08 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 56 / 2e-08 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G065318.1 pacid=42792407 polypeptide=Potri.001G065318.1.p locus=Potri.001G065318 ID=Potri.001G065318.1.v4.1 annot-version=v4.1 ATGGGGCTGTTCCTTCAGATGTTGACGGTGTTTGTAACGATGGTTTCCCTGCAAGGATGGCTGCCTCTTGGTTGCTTGGAGGAAGAGAGAATCGCTCTGT TGCACCTCAAAGATGCTCTTAACTATCCTAATGGCACCTCCCTACCCTCCTGGATAAAAGGTGACGCCCACTGCTGTGATTGGGAAAGTATTATCTGCGA CAGCAGTACAGGTCGAGTCACCGAGCTCGATCTTGAGGGCGTAAGGGATCGGGAACTGGGAGATTGGTACTTAAATGCCTCCTTGTTTCTTCCTTTCCAA CAACTCAACGGTCTCTACTTGACAGCTAATCGTATAGCTGGGCTGGTTGAGAAGAAAGGTGGTTATGAACAATCAAGATTGAGCAATTTAGAGTACCTTG ACTTGGGAATTAATGGTTTCGATAACAGTATTTTATCATATGTGGAGCGGCTTTCATCTCTTAAATCACTATATTTGAATTATAATAGACTGGAGGGGTT AATAGATTTGAAAGATTCCCTGAGTAGCTTGGAGAGATTGGATTTAAGCGGCAACAATATTAATAAATTGGTAGCCTCAACAGGTGGTTATGAGTTAACT AAATCGAGCAATTTGGAGCATCTTGACTTGGGATATAATCGCTTTGATAATAGTATTTTATCATTTGTGGAGGGGATTTCATCTCTTAAATCATTATATT TGGATTATAATAGAGTGGAGGGGTTAATAGATTTGAAAGAATCTTTGAGCGGCTTGGAGTTGTTGGGTTTGAACGGCAACAATATTAACAAATTGATAGC CTCAAGAGGTCCAAGCAGCTTGAGTACTCTATGGCTAGAAAATATCACAACCTATGGAAGGAAGTAG
AA sequence Show only first row Show all	>Potri.001G065318.1 pacid=42792407 polypeptide=Potri.001G065318.1.p locus=Potri.001G065318 ID=Potri.001G065318.1.v4.1 annot-version=v4.1 MGLFLQMLTVFVTMVSLQGWLPLGCLEEERIALLHLKDALNYPNGTSLPSWIKGDAHCCDWESIICDSSTGRVTELDLEGVRDRELGDWYLNASLFLPFQ QLNGLYLTANRIAGLVEKKGGYEQSRLSNLEYLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKDSLSSLERLDLSGNNINKLVASTGGYELT KSSNLEHLDLGYNRFDNSILSFVEGISSLKSLYLDYNRVEGLIDLKESLSGLELLGLNGNNINKLIASRGPSSLSTLWLENITTYGRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.001G065318 [exp]	0	1
AT4G05030			Copper transport protein famil...		Potri.001G468500 [exp]	1.41	0.9345
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065309 [exp]	8.12	0.9217
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020000 [exp]	9.79	0.9077
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G144300 [exp]	10.19	0.9203
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024140 [exp]	11.22	0.9119
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G009300 [exp]	12.64	0.8816
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013200 [exp]	14.73	0.9082
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G026308 [exp]	16.91	0.8989
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	18.43	0.9049
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G026914 [exp]	21.90	0.8566

Compare expression of checked genes

Potri.001G065318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.