Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19080 149 / 2e-45 metaxin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145508 [exp] 226 / 6e-76 AT2G19080 322 / 2e-110 metaxin-related (.1) Potri.006G077100 [exp] 206 / 1e-67 AT2G19080 332 / 7e-114 metaxin-related (.1) Potri.001G064609 [exp] 154 / 1e-49 AT2G19080 101 / 4e-27 metaxin-related (.1) Potri.018G147625 [exp] 144 / 1e-43 AT2G19080 196 / 2e-61 metaxin-related (.1) Potri.018G145080 [exp] 135 / 2e-41 AT2G19080 102 / 2e-26 metaxin-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015535 [exp] 145 / 6e-44 AT2G19080 308 / 2e-104 metaxin-related (.1) Lus10020010 [exp] 147 / 2e-42 AT2G19080 308 / 1e-99 metaxin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G065336.1 pacid=42792719 polypeptide=Potri.001G065336.1.p locus=Potri.001G065336 ID=Potri.001G065336.1.v4.1 annot-version=v4.1 ATGAAAGCGATGGTTAGCACCTGGCTTGCAGATGCAATCATGTATGAACTCTGGGTGGGGTCTGATGGAACCTCTGCCCGAACAATTTATGACTCTAGCC TCCCTTGGTTGATAGGAAAGGCTCTATTAATGAAACAAGTGCACGCTGTTAAGCAGCGACTTGGGATAACTAAAGAAAATGCTGAACGAAGGGAAGCAGA GATCTACAAGAGAGCGAAAATTGCATATGGAGCTTTGTCAACCACATTAGGGGATCACACATTTCTTTTTGAAAGGCCATCTAGTTTGGACGCATATTTC CTTGGGCATCTCCTTTTCACTCTTCAAGCATTTCCTGTGAGTCACTTTACCAATTGTCTTGATCTGTGA
AA sequence Show only first row Show all	>Potri.001G065336.1 pacid=42792719 polypeptide=Potri.001G065336.1.p locus=Potri.001G065336 ID=Potri.001G065336.1.v4.1 annot-version=v4.1 MKAMVSTWLADAIMYELWVGSDGTSARTIYDSSLPWLIGKALLMKQVHAVKQRLGITKENAERREAEIYKRAKIAYGALSTTLGDHTFLFERPSSLDAYF LGHLLFTLQAFPVSHFTNCLDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19080			metaxin-related (.1)		Potri.001G065336 [exp]	0	1
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	11.83	0.9651
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	13.96	0.9650
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	16.37	0.9649
AT1G73325			Kunitz family trypsin and prot...		Potri.010G007700 [exp]	20.63	0.9316
					Potri.017G120650 [exp]	21.97	0.9645
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.011G032300 [exp]	22.71	0.9502
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	23.49	0.9645
					Potri.007G014501 [exp]	27.54	0.9645
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	31.08	0.9645
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	32.40	0.9642

Compare expression of checked genes

Potri.001G065336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.