Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33540 919 / 0 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT5G58003 241 / 9e-70 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G04930 113 / 3e-27 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 109 / 7e-26 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 109 / 7e-26 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 109 / 9e-26 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 108 / 4e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 105 / 6e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 105 / 2e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 102 / 3e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164300 [exp] 1935 / 0 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.018G108300 [exp] 238 / 2e-68 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.011G078300 [exp] 50 / 1e-05 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 50 / 1e-05 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 48 / 4e-05 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 46 / 0.0002 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036271 [exp] 1142 / 0 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10036689 [exp] 224 / 5e-63 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 223 / 5e-63 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10036277 [exp] 223 / 7e-63 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10021854 [exp] 81 / 1e-16 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10015787 [exp] 50 / 1e-05 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.001G065600.1 pacid=42788733 polypeptide=Potri.001G065600.1.p locus=Potri.001G065600 ID=Potri.001G065600.1.v4.1 annot-version=v4.1 ATGGGTAAAAATGAGACCGCCGGCGGCGGCCGCAGTAGTGGAATAGAAGACGTTGAGGAGGGGGAAATATCGGATACAGCATCAGTGGAAGAGATCAGTG AAGAGGATTTTAATAAGCAAGAAGTTGTTATAGTGAAAGAAACACCATCTTCAAACAACAGCTCACAGAAAGTTTGGACGGTGAGGGATCTGTACAAGTA TCAAGTAGGAGGTGGATATATGTCTGGCTTGTATAATCTTGCCTGGGCACGAGCTGTTCAAAATAAGCCATTAAATGAGCTGTTTGTTGAGGTTGAACTG GATGATAGTTCCAAGAAATCTTCTATAAATAGTAGCGAAGAAGATAAGAGAACTGTCGTGATCGATGATAGTGGTGATGAGATGGATGTTGTTAAAGTTA TTGATATTGAGAAAGAGGAGGGGGAGTTGGAGGAAGGTGAGATTGATTTGGATTCGGAGCCGGTGGTGGTGCAGAGTGAGGGAATGGTGAGTGTTGATGT CGAAAACAGGGTGAAGTCTATTCGTAAAGATTTGGAGAGTGTTAGTGTGATTGAAACTGAGAAGTCATTTGAGGCAGTTTGTTTGAAACTGCATAAAGTA TTGGAGAGTTTGAAGGAATTGGTGGGGGGAAATGATAATAGTTTTCCCTCAAAAGATGGTCTTGTTCAATTGCTTTTTATGGCAATTAGAGTAGTTAATT CGGTTTTTTGCTCGATGAATAAAAAATTAAAGGAGCAGAATAAGGGCGTTTTCTCAAGGTTTTTTTCCCTTCTAAATAGCCACTATCCTCCTTTTTTCTC TCCTGGGCAGAACAAAGAGATAGAGCTCATGGTTTCCTCAACGGGTTCTAATTATATTTTATCTAGTTCAAGAACTGGTGAAGATAGAGAAACACAGGTT TCTGGTGAAGTGAATGAGAATCATAACGATTCTTTAGCGAAAACTGCAGGTTATGATTTGACAACTATGAGTGAAAAGTTACCTGCTGCTGAAACTTTTG TTCAGAATAAGCCAAACAAGTCAATAGAAGCTCCTAAACCACCAGGTGTACCTAGTTTTAAGAGTAGGGGAGTTTTGCTTCCTTTGCTTGACCTCAAAAA ATATCATGATGAAGACAGTCTTCCTTCACCAACACAGGAAACGACACCGTTCCCTGTTCAAAGACTATTGGCTATTGGGGATGGAATGGTTAGTTCTGGA TTGCCTGTGCCTAAGGTGACACCTGTTGCTGAAGAGCCTAGAATGCATCCCTATGAAACTGATGCACTCAAAGCTGTTTCCAGCTATCAACAAAAATTCA ATCGTAATTCGTTTTTCACAAATGAACTTCCAAGCCCAACACCTTCGGAAGAATCAGGCAATGGGGATGGTGATACTGCTGGGGAAGTTTCTAGTTCATC AACTGTTGTTAACTACAGAACTGTAAATCCACCTGTTTCAGACCAAAAAAATGCTCCTCCTTCACCACCACCACTACCACCTCCTCCTCCCCACCCTGAC AGTTCTAATATTCGTGGAGTTGTACCCACTAGGAATTCTGCACCAGTTAGTTCTGGGCCTAGTTCAACCATCAAAGCATCTGCAAAGAGCAGGGACCCTA GGCTTCGATATGTTAATATTGATGCCTGTGCTTTGGACCACAACCAGCGAGCCTTGCCCATGGTTAATAACCTACCTAGAGTGGAACCTGCTGGAGCAAT AGTGGGTTCGAAGAAACATAAGATAGAGGAGGATGTTCTGGATGATCCCTCATTGAAAAGGCAAAGAAATTCGTTTGATAATTATGGTGCTGTAAGGGAT ATTGAAAGTATGACCGGAACTGGTGGTTGGTTAGAGGACACTGATATGGCTGAACCTCAAACCGTGAACAAAAATCAGTGGGCAGAGAATGTAGAACCTG GTCAAAGAATAAATAATGGATTTGTATGTCCTAGTTCCGGTAATGTTAAGTCCAATGTGAATGGTAGTGGAAATGCGCAGTCCCCATTTATGGGAATCAG CAACATTACTGGAAGTGAACAGGCACAAGTTACAAGTACTGCTACAACGTCCCTTCCTGATTTATTGAAAGACATCGCTGTGAATCCAACAATGTTGATA AATATACTTAAAATGGGACAGCAACAGAGATTAGCATTAGATGGACAGCAGACACTTTCTGATCCTGCAAAAAGTACATCACATCCTCCAATTTCCAACA CAGTACTGGGAGCAATTCCTACAGTGAATGTTGCTTCCTCACAGCCCTCTGGGATTTTCCCAAGACCTGCAGGAACTCCAGTTCCTTCTCAAATAGCCAC ATCAGATGAGTCAGGAAAAATTCGAATGAAACCACGAGATCCTCGTCGTTTTCTCCATAATAATTCACTCCAGAGGGCTGGGAGCATGGGATCTGAACAA TTCAAAACAACAACCCTCACACCCACCACCCAGGGGACTAAAGATGATCAAAATGTGCAAAAACAAGAGGGGTTAGCGGAATTGAAGCCAACTGTGCCAC CTGATATTTCCTTTCCGTTTACAAAGAGCTTGGAAAATATTGCTGATATTTTATCTGTTTCTCAAGCATCGACAACTCCACCTTTCATTTCTCAGAATGT TGCATCCCAACCTATGCAAACTAAGTCGGAGAGAGTGGATGGCAAAACTGGAATTTCAATTTCTGACCAGAAAACTGGACCTGCTTCATCTCCTGAAGTT GTTGCAGCAAGTTCTCATTCACAGAACACGTGGAAAGATGTTGAGCATCTTTTTGAAGGCTATGATGACCAGCAAAAAGCTGCTATACAGAGAGAGAGGG CAAGAAGGTTGGAAGAACAGAAGAAAATGTTTGCTGCACGCAAGCTCTGCCTTGTCTTGGATCTTGATCATACTCTTCTCAATTCAGCCAAGTTTGTTGA AGTAGACCCAGTGCATGATGAGATTTTGAGAAAGAAAGAAGAACAAGATCGTGAAAAGCCATACAGACATATCTTTCGCATTCCTCATATGGGGATGTGG ACGAAACTGCGGCCTGGGATCTGGAATTTTTTAGAAAAGGCTAGTAAACTGTTTGAACTGCATCTATACACAATGGGAAACAAGTTATATGCTACAGAGA TGGCAAAAGTGCTTGATCCAAAAGGGGTTTTGTTTGCTGGACGAGTTATCTCCAGAGGTGATGATGGAGATCCTTTTGATGGTGATGAGAGGGTTCCCAA GAGCAAGGATCTTGAAGGGGTGTTAGGTATGGAGTCAGGTGTTGTTATCATAGACGATTCAGTGAGAGTCTGGCCCCATAACAAATTGAACTTGATAGTT GTAGAAAGGTATATTTATTTCCCTTGTAGTAGACGTCAGTTTGGGCTTCCTGGTCCTTCTCTTTTGGAGATCGACCATGATGAGAGACCAGAAGATGGAA CTTTGGCATGCTCTTTTGCGGTTATTGAGAAAATACATCAGAACTTTTTTACCCATCGTTCACTAGATGAAGCAGATGTTAGGAATATCCTTGCCTCAGA GCAGAGGAAGATTTTAGGTGGCTGTCGCATACTATTTAGTAGGGTGTTCCCGGTTGGTGAAGTCAACCCCCACCTTCATCCATTGTGGCAGATGGCAGAA CAGTTTGGTGCTGTCTGCACCAACCAGATAGACGAACAGGTTACTCATGTTGTTGCCAATTCCCTTGGGACAGATAAGGTAAATTGGGCTCTTTCCACGG GAAGAATTGTTGTCCATCCTGGCTGGGTGGAAGCATCGGCTTTGCTTTATCGAAGAGCAAATGAGCAAGATTTTTCCATTAAACCATAA
AA sequence Show only first row Show all	>Potri.001G065600.1 pacid=42788733 polypeptide=Potri.001G065600.1.p locus=Potri.001G065600 ID=Potri.001G065600.1.v4.1 annot-version=v4.1 MGKNETAGGGRSSGIEDVEEGEISDTASVEEISEEDFNKQEVVIVKETPSSNNSSQKVWTVRDLYKYQVGGGYMSGLYNLAWARAVQNKPLNELFVEVEL DDSSKKSSINSSEEDKRTVVIDDSGDEMDVVKVIDIEKEEGELEEGEIDLDSEPVVVQSEGMVSVDVENRVKSIRKDLESVSVIETEKSFEAVCLKLHKV LESLKELVGGNDNSFPSKDGLVQLLFMAIRVVNSVFCSMNKKLKEQNKGVFSRFFSLLNSHYPPFFSPGQNKEIELMVSSTGSNYILSSSRTGEDRETQV SGEVNENHNDSLAKTAGYDLTTMSEKLPAAETFVQNKPNKSIEAPKPPGVPSFKSRGVLLPLLDLKKYHDEDSLPSPTQETTPFPVQRLLAIGDGMVSSG LPVPKVTPVAEEPRMHPYETDALKAVSSYQQKFNRNSFFTNELPSPTPSEESGNGDGDTAGEVSSSSTVVNYRTVNPPVSDQKNAPPSPPPLPPPPPHPD SSNIRGVVPTRNSAPVSSGPSSTIKASAKSRDPRLRYVNIDACALDHNQRALPMVNNLPRVEPAGAIVGSKKHKIEEDVLDDPSLKRQRNSFDNYGAVRD IESMTGTGGWLEDTDMAEPQTVNKNQWAENVEPGQRINNGFVCPSSGNVKSNVNGSGNAQSPFMGISNITGSEQAQVTSTATTSLPDLLKDIAVNPTMLI NILKMGQQQRLALDGQQTLSDPAKSTSHPPISNTVLGAIPTVNVASSQPSGIFPRPAGTPVPSQIATSDESGKIRMKPRDPRRFLHNNSLQRAGSMGSEQ FKTTTLTPTTQGTKDDQNVQKQEGLAELKPTVPPDISFPFTKSLENIADILSVSQASTTPPFISQNVASQPMQTKSERVDGKTGISISDQKTGPASSPEV VAASSHSQNTWKDVEHLFEGYDDQQKAAIQRERARRLEEQKKMFAARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKPYRHIFRIPHMGMW TKLRPGIWNFLEKASKLFELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESGVVIIDDSVRVWPHNKLNLIV VERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLACSFAVIEKIHQNFFTHRSLDEADVRNILASEQRKILGGCRILFSRVFPVGEVNPHLHPLWQMAE QFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRIVVHPGWVEASALLYRRANEQDFSIKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.001G065600 [exp]	0	1
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	2.44	0.8083
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	2.44	0.8637
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	2.44	0.8677
AT2G39260			binding;RNA binding (.1)		Potri.008G045400 [exp]	6.00	0.8261
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.012G013900 [exp]	10.19	0.7898	SDG914
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	10.24	0.8084
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	12.00	0.7975
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	12.96	0.8107	CHR928,PIE1.4
AT1G11950			Transcription factor jumonji (...		Potri.004G006200 [exp]	14.69	0.7242
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	17.32	0.7704	SNT901

Compare expression of checked genes

Potri.001G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.