Plant FIBer expression Database

Potri.001G065800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48860 529 / 0 unknown protein
AT5G13260 516 / 2e-179 unknown protein
AT5G23700 424 / 1e-142 unknown protein
AT4G25070 403 / 6e-132 unknown protein
AT4G08630 318 / 7e-99 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G164100
[exp]
806 / 0 AT5G13260 529 / 0.0 unknown protein
Potri.012G105400
[exp]
570 / 0 AT3G48860 546 / 0.0 unknown protein
Potri.015G104600
[exp]
493 / 3e-169 AT3G48860 452 / 3e-153 unknown protein
Potri.005G044600
[exp]
410 / 1e-135 AT4G08630 436 / 5e-142 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001801
[exp]
622 / 0 AT5G13260 591 / 0.0 unknown protein
Lus10002574
[exp]
599 / 0 AT5G13260 566 / 0.0 unknown protein
Lus10043194
[exp]
537 / 0 AT3G48860 684 / 0.0 unknown protein
Lus10036015
[exp]
532 / 0 AT3G48860 675 / 0.0 unknown protein
Lus10032546
[exp]
531 / 0 AT3G48860 595 / 0.0 unknown protein
Lus10016721
[exp]
514 / 6e-178 AT3G48860 674 / 0.0 unknown protein
Lus10001720
[exp]
312 / 2e-97 AT4G08630 471 / 5e-155 unknown protein
Lus10004138
[exp]
287 / 6e-88 AT4G08630 464 / 2e-152 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G065800.8 pacid=42790021 polypeptide=Potri.001G065800.8.p locus=Potri.001G065800 ID=Potri.001G065800.8.v4.1 annot-version=v4.1
ATGGACTGGCAAAGAACTGAAAGTCCGCTCTACACGCGCCAAGGGACCAGCGACCCCGCCTCTTCTCCGACAGCGGCTACGGTGCAAAATGCGCGTCACG
GTCACCATGCGCGATCCTCTTCCGCCTCTGGATTATCCACCATCAAGCGAAACCAGAATGTGGCGGCTAAAGCGGCGGCTCAGCGGCTGGCGCAGGTCAT
GGCCTCTCAAACTGCTGATGACGACGGCGACGACGAAAATGACGGCGATGATCTAGGGTTTCGTTACAGTGCGCCTCCGCCTCTGTCTTTTTCGAGGAAT
GTTAATAGTAACAATACAAATGTTACCACTACTAGTAAAGCTTCGTCCACTGCTGCGTCTTCAAGGATCAATAGATCTCCTTCACCTGCGTTAGCTAGGA
ATTTTGAAGAGCCTGCATCAGGTGGATCAACATCAGCTGGAAGGCCAGCAATGTCTCTTAGAACGGCAGCAGCAGCAGCAGCAGCAGTGCCACAGAGCAA
AGGATCATTGAGGACTGCGGTTTCTTTACCGCCAATGGATCCTCCGAGAAATGGACATAGAGATGGTAAAAGATTCTTGTCAGATGCTGTTCAATTTAAC
TCAAAAGATACGGGAGATCAACGTGAAGCTTCTGCACTCCGTGATGAACTTGATATGCTACAAGAAGAGAATGAAAACATCTTTGAGAAGCTCCGGCTTG
AGGAAGAGAGATGCGAGGAAGCAGAGGCCAGAGTCAAGGAGCTTGAGAAACAGGTTGCTGCTTTTGGAGAAGGAGTATCTTTAGAAGCTAAATTGCTTAG
CAGAAAGGAAGCTGCTTTGCGGCAGAGAGAGGCTGCACTAAAGGATGCAAAACAAAATAATATGGTGGACAAGGAAATTGCATCTATTCGGTCTGAAGTA
GAGAATGCAAAAGATGAGGCAGCAGCAGTTATGCGACAGCTGCAGGGAGCTGAATCTGAAGTGAAGGCCCTTCGATCAATGACACAAAGAATGATATTGA
CTCAGAAAGAAATGGAAGAGGTTGTTCTTAAGAGGTGTTGGCTTGCTCGATACTGGGGCTTAGCTGCAAAATATGGTATCTGTGCGGATGTTGCTGTGTC
AAAGCATGAATACTGGTCATCCTTAGCACCTCTTCCATTTGAGGTGGTTGTTTCCGCTGGACAAAAGGCTAAGGAGGAATGTTGGGAAAAAGGTGATGAG
GACAGTGAGAAGAGAAGTACCCTTGCACAAGACTTGAGCGATCTAACTGGTGAAGGAAATATCGAGAGTATGCTCTCAGTTGAAATGGGTTTGAAGGAGC
TTGCTTCCTTGAAGGTTGAGGATGCCATTGTGCTTGCACTGGCCCAACAGCGGCGAGCAAACTCTCTTCGACTCTCCATCTCAGATGTCAAATCGCCTGG
TGATCCAAAGTATACGGAAGCATTTGAATTGAGTCCGGAGGAGTCTGAAGATGTTCTTTTCAAGGAGGCGTGGCTTACATATTTTTGGAGAAGAGCCAAA
GCCCATGGTATAGAGGAGGACACTGCAAAAGAACGATTTCAATTTTGGATTAGCTGCAGTGCGCACTCACCAAGTTCACATGATGCTGTTGATGTTGAGC
AAGGCCTGATGGAGCTCAGGAAGTTGGGAATAGAGCATCGATTGTGGGAAGCATCTCGCAAAGAAATCGATCAGGACTCATAA
AA sequence
>Potri.001G065800.8 pacid=42790021 polypeptide=Potri.001G065800.8.p locus=Potri.001G065800 ID=Potri.001G065800.8.v4.1 annot-version=v4.1
MDWQRTESPLYTRQGTSDPASSPTAATVQNARHGHHARSSSASGLSTIKRNQNVAAKAAAQRLAQVMASQTADDDGDDENDGDDLGFRYSAPPPLSFSRN
VNSNNTNVTTTSKASSTAASSRINRSPSPALARNFEEPASGGSTSAGRPAMSLRTAAAAAAAVPQSKGSLRTAVSLPPMDPPRNGHRDGKRFLSDAVQFN
SKDTGDQREASALRDELDMLQEENENIFEKLRLEEERCEEAEARVKELEKQVAAFGEGVSLEAKLLSRKEAALRQREAALKDAKQNNMVDKEIASIRSEV
ENAKDEAAAVMRQLQGAESEVKALRSMTQRMILTQKEMEEVVLKRCWLARYWGLAAKYGICADVAVSKHEYWSSLAPLPFEVVVSAGQKAKEECWEKGDE
DSEKRSTLAQDLSDLTGEGNIESMLSVEMGLKELASLKVEDAIVLALAQQRRANSLRLSISDVKSPGDPKYTEAFELSPEESEDVLFKEAWLTYFWRRAK
AHGIEEDTAKERFQFWISCSAHSPSSHDAVDVEQGLMELRKLGIEHRLWEASRKEIDQDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48860 unknown protein Potri.001G065800
[exp]
0 1
AT2G42500 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2... Potri.001G007800
[exp]
1.41 0.9436 PP2.4
AT1G04650 unknown protein Potri.003G175300
[exp]
2.44 0.9318
AT1G21480 Exostosin family protein (.1.2... Potri.002G072300
[exp]
2.82 0.9244
AT2G16405 Transducin/WD40 repeat-like su... Potri.004G160000
[exp]
6.00 0.9241
AT2G38020 EMB258, MAN, VC... VACUOLELESS 1, MANGLED, vacuol... Potri.002G057800
[exp]
6.63 0.9176 Pt-VCL1.3
AT5G05970 NEDD1 NEURAL PRECURSOR CELL EXPRESSE... Potri.010G197700
[exp]
8.48 0.9158
AT4G20760 NAD(P)-binding Rossmann-fold s... Potri.011G157300
[exp]
9.48 0.9002
AT3G61130 GAUT1, LGT1 galacturonosyltransferase 1 (.... Potri.014G073800
[exp]
14.49 0.9179
AT2G04410 RPM1-interacting protein 4 (RI... Potri.012G092601
[exp]
15.87 0.8964
AT4G33945 ARM repeat superfamily protein... Potri.004G144100
[exp]
15.96 0.9244

Potri.001G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.