Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13270 978 / 0 RARE1 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 501 / 5e-167 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 502 / 2e-166 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 504 / 2e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 491 / 6e-162 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 491 / 4e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 481 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 465 / 1e-152 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G18750 467 / 3e-152 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 459 / 2e-151 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 518 / 7e-172 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 520 / 3e-170 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 509 / 5e-170 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 509 / 2e-167 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 496 / 2e-163 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 495 / 2e-161 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 489 / 2e-161 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 475 / 5e-156 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 471 / 1e-154 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018978 [exp] 520 / 1e-170 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 501 / 7e-166 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 485 / 4e-160 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004892 [exp] 487 / 1e-159 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 479 / 3e-159 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 474 / 5e-154 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 482 / 1e-153 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013991 [exp] 473 / 1e-153 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 481 / 4e-153 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038839 [exp] 455 / 6e-151 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G066100.1 pacid=42790537 polypeptide=Potri.001G066100.1.p locus=Potri.001G066100 ID=Potri.001G066100.1.v4.1 annot-version=v4.1 ATGCAAAGACAACCTGCCTGGCTCTTAGCACTGAACAAGAGTTCGTCGCATAATTATATTGTAAAAAAATTCGAAATTCCTGCAAATTCCCTGTCTTCAA TGAATGCCCACTACTGTTTTGCTGTGTCATCTCTCAATCCATCGCCAGTAATAATAGCTCATGACAAGATTCCACAATCCATAAAAGCTGCAGCAAACTT TTCTCAAATACCTTCATGGGTCTCATTAAAATCAACTCCTTCTTCACTCCAAACCCAAGAAAATATTAACAAAGCCCAAATTGAGAGTATCCACTTGATT TCTCTATCTAAACAAGGGAAGCTCAAGGAAGCTCGTGAATTTCTCAAACAAATGGAGGACGCTGGTATTTCTGTTAGCCCTCGTTCTTATAAATGCTTGT TTGAAGCGTGTGGAAAGATTAAATCTTTATTGGATGGGAGATTGTTTCATGAACAAATGCAAAGAACAGTGAAAAACCCACCTGAGTTTCTTGAGAATTC AGTGCTTAAGATGTATTGCGAGTGTGGAAGTTTAGCTGATGCTCGTAAGGTGTTTGATGAAATGCGTGAAAGGAATTTGGTTTCTTGGAATACAATTATA TCAGCTTATGCAGAAAATGGTGTTTTTGATAAAGGTTTTTGCATGTTTTCGAATATGCTTGAATTGGAAACTAAACCGAATGGGTCCACTTATATTGGGT TTCTACGGTCCTTGTTAAATCCTTCCGGTTTAGAGATTGGTAAACAGATACATTCTCATGCCATAAGAAGTGGGTTAGGCAGTAATGCTTCAGTTAACAC AGCAATCAGCAATATGTACGTGAAATGTGGTTGGTTAGAGGGAGCCGAGCTTGTTTTTGAGAAAATGAGTGAAAAGAATGCAGTAGCTTGGACTGGAATA ATGGTGGGGTACACTCAAGCTGAGAGGCAAATGGATGCTTTGGCTTTGTTTGCCAAGATGGTCAATGAAGGTGTTGAATTGGATGAGTATGTATTCTCAA TTGTTCTCAAAGCATGTGCTGGTTTAGAGGAGTTGAATTTTGGGAGGCAAATTCATGGTCATATTGTTAAACTTGGGTTGGAATCTGAAGTTTCTGTGGG AACTCCGCTTGTGGACTTTTATGTTAAATGTTCAAATTTGGAATCTGCGACTAAAGCATTTGAATGGATCAGTGAACCAAATGATGTTTCTTGGAGTGCT TTGATAACAGGTTATTGCCAAATGGGTGAATTTGAGGAAGCTCTCAAAACTTTTGAATCATTGAGGACCAGAAGTGTGGATATAAATTCGTTCACATATA CAAGCATTTTCCAAGCATGCTCTGCACTTGCAGATTTCAACAGTGGTGCCCAAGCTCATGCAGATGCAATAAAAAGCAGTCTGGTTGCATATCAACATGG AGAGAGTGCAATGATTACCATGTATTCAAGATGTGGCAGATTAGATTATGCCACTCGAGTCTTTGAATCAATAGATGACCCTGATGCAGTGGCTTGGACT GCTATAATTGCTGGTTATGCTTATCAGGGTAATGCTCCTGAAGCTCTAAAGCTTTTCAGAAGGATGCAGGATTGTGGTGTGAGACCAAATGCAGTTACAT TTATTGCAGTTTTAACTGCTTGTAGTCATTCGGGTTTGGTCATAGAGGGCAGACAGTATTTGGAGTCGATGAGTAGCAATTATGGGGTTGCCACAACTAT TGATCATTATGATTGTATGGTTGATATATATTCCCGAGCTGGTTTTCTGCAGGAAGCACTTGAACTAATAAGGAGTATGCCATTTTCACCAGATGCAATG AGTTGGAAATGTTTGCTGGGTGGGTGCTGGACCTATAGGAATCTTGAGATTGGGGAACTTGCAGCTGAAAACCTCTTTCAGCTGGACCCAGAGGATACTG CAGGTTATATTCTCATGTTTAATCTGTATGCTTCATTTGGGAAATGGAAAGAAGCAGCTAATGTTAGAAAGATGATGGCAGAAAGAAATTTGAGGAAGGA GCTTAGCTGCAGCTGGATTACTGTCAAGGGTAAAGTGCACCGGTTTATAGTAGGTGATAAGCACCACCCTCAGACCGAAGAGATCTATTCAAAGTTGGAA GCATTGAATGATTCTGTTATAAAAGAAGAAACTGGCCTTTTAACAGAAGAAGATGTATCAAATAGTTTGCCAGAGAGGAAAGAACAGCTTCTTGTCCATA GTGAGAGACTTGCATTGGCATTTGGGCTCATATCTACACCAAGTAGTGCTCCTGTTGTTGTTTTCAAGAACCTCAGGGCTTGCAAGGACTGCCATGATTT TGGCAAACAGGTATCCTTGATCACTGGACGTGAAATCGTTGTTAGAGATTCTTTCAGATTCCATCACTTCAAGTTAGGGGAATGCTCTTGCAATGACTAT TGGTGA
AA sequence Show only first row Show all	>Potri.001G066100.1 pacid=42790537 polypeptide=Potri.001G066100.1.p locus=Potri.001G066100 ID=Potri.001G066100.1.v4.1 annot-version=v4.1 MQRQPAWLLALNKSSSHNYIVKKFEIPANSLSSMNAHYCFAVSSLNPSPVIIAHDKIPQSIKAAANFSQIPSWVSLKSTPSSLQTQENINKAQIESIHLI SLSKQGKLKEAREFLKQMEDAGISVSPRSYKCLFEACGKIKSLLDGRLFHEQMQRTVKNPPEFLENSVLKMYCECGSLADARKVFDEMRERNLVSWNTII SAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGI MVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSA LITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWT AIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAM SWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLE ALNDSVIKEETGLLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDY W

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	0	1
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	2.44	0.9403
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	3.31	0.9443	CRR2.1
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	4.00	0.9435
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	4.12	0.9155
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	5.91	0.9346
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	6.00	0.9236
AT5G11480			P-loop containing nucleoside t...		Potri.018G037000 [exp]	6.00	0.9321
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	9.38	0.9245
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	9.48	0.9281
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.004G059400 [exp]	11.66	0.9291

Compare expression of checked genes

Potri.001G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.