Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 765 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 461 / 1e-152 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 435 / 2e-143 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 431 / 3e-141 ARF ARF9 auxin response factor 9 (.1.2) AT3G61830 419 / 2e-137 ARF ARF18 auxin response factor 18 (.1) AT5G60450 364 / 5e-114 ARF ARF4 auxin response factor 4 (.1) AT2G33860 348 / 5e-110 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G37020 349 / 2e-108 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G35540 342 / 2e-107 ARF ARF14 auxin response factor 14 (.1) AT1G34410 339 / 1e-106 ARF ARF21 auxin response factor 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163600 [exp] 1268 / 0 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 759 / 0 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 749 / 0 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G088600 [exp] 533 / 3e-180 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G207050 [exp] 484 / 1e-160 AT5G62000 454 / 4e-148 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G228800 [exp] 465 / 2e-154 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 464 / 6e-154 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 451 / 4e-148 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 443 / 3e-145 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032541 [exp] 753 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 751 / 0 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 468 / 4e-155 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 462 / 9e-153 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 439 / 4e-144 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032413 [exp] 379 / 9e-126 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10013942 [exp] 360 / 1e-113 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10005264 [exp] 359 / 3e-113 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10024320 [exp] 353 / 7e-111 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10012421 [exp] 358 / 4e-110 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.001G066200.12 pacid=42791796 polypeptide=Potri.001G066200.12.p locus=Potri.001G066200 ID=Potri.001G066200.12.v4.1 annot-version=v4.1 ATGATTAACGGAAGTTATTCTGTGGATAATAAACGTAATGGAATTGCGAGAGGGAGTTCGAGTTTTCCGGTGGCCGGTGAAGGATCAGAGGATGCACTGT ACAAGGAACTGTGGCACGCATGTGCAGGTCCGTTAGTGACAGTGCCTCGCCAAGGAGAGCTTGTTTACTACTTTCCTCAAGGTCATATTGAACAGGTTGA AGCATCGACGAATCAGGTTGCTGATGATCAGCAAATGCCGGCTTATAATCTTCCTCCTAAAATCCTCTGTCGTGTGGTTAATGTTCAATTGAAGGCTGAG CTGGATACAGATGAAGTGTTTGCTCAAGTCATTCTGCTTCCTGTAGCTGAACAAGATGTGGACTTGGTGGAGAAGGAGGATTTGCCGCCTCCGCCTGCAC GTCCTCGGGTGCATTCCTTTTGTAAGATGCTTACAGCATCAGATACGAGCACACATGGTGGATTTTCAGTGTTGAGACGGCATGCTGATGAATGTCTACC TCCTTTGGACATGTCCCTACAACCTCCAGCACAGGAGCTGGTAGCCAAAGATTTGCATGGAAATGAGTGGCGTTTCCGCCACATATTTCGAGGTCAACCA AGAAGGCACCTTCTTCAAAGTGGTTGGAGTCTCTTTGTCAGTGCCAAAAAGCTTGTGGCGGGAGATGCTTTTATTTTTCTTAGGGGTGAAACTGAAGAGC TTCGTGTAGGGGTAAGACGTGCTCTGAGTCAGCCAAGCAATGTCCCATCTTCTGTAATGTCTAGTCACAGCATGCATATTGGCATCCTTGCAACTGTGTG GCATGCTGTTTCGACAGGATCAATGTTCACTGTTTATTATAAACCAAGGACTAGTCCTGCCGAGTTTATTATTCCAATTGATAAATATAGGGAGTCTGTC AAGATAAACTATGCTATAGGGATGAGGTTCAAAATGAAATTCGAAGCTGAAGAGGCCCCAGAACAAAGGTTCTCTGGCACTGTAATTGGAGTAGAAGAGG CAGATCCAAAGAAGTGGCCTCGCTCAAAGTGGAGATGCCTCAAGGTTCGCTGGGATGAAACTTCTCCTGTTCACCGTCCAGACAGGGTTTCTCCTTGGAA AATAGAACGTGCTTTGGCTCCTTCTCTGGATCCCGTTCCGGGGTGCCAATCGAAAAGGCATCGTTCAAACATGGCAACATCATCTGCAGATTCCTCTGCT CCTACAAAGAAAGATAATGAGCCTTCAAGACACCTGCAACATAAAGAAATCTTGACCTTGAGAAACACACATGCTGGGAAGAATTACTCAGATAGTAAGC ACAATCCTGCACAGGCTCTATTTCAAGGTAAGGATCAGACTGCTTTTGATAATAGAAAACTTGGACCAGATGACAAGATTCCTCAAGTAATGCATGGAGC AAAACTCATGAACCTAACAACAGGACCTGGAACCCTGCATGAATCCTATGAATCAACTCGCCCCTTCTTTGAGCTGAACTCTGATGACGTTGATCGACCC AGTAAACTTAATGAAACAGGCATGTTCAACTGCCATTCAGCTCCCTTGATGTATTTAGGCCACCCATTTAACATGATGGCATCTAGGATGGAAGTTCATG TGGCAAAAGATAAAGACATACAACAGCAGCGTGGAAGCTGGTTTTCACCTTTGCCATATGCTGATAATTCTTCTCATCCTTCGGGATCTAAACCACAGCA TCTTCCTTTTCAACAACGTAACAAGGAAACATCTAAAGATGGTAATTGCAAACTTTTCGGCTTCTCCCTTTTTGGGAATCCTATGGCTGCAGAACCAGCC ATTATACACAGGCACTCCACAGAGAAACAACAGCAGCAAATCAATGTTGCATCAGATCACCTGAAATTGTTGGGTTCTGAAGGATTTTTGGAGCAAGCAA AGCATTCAAAGCATGTTAGACCTGAGGAACAAGGGAACATTTTTCAAGCTTCTGCTCTTCATTCTAAAGATGTCCAGGGCATGCCCGAGGGTGATTCAAC CAGAAGATGTGTAAAGGTTTACAAGCAGGGGACTGCTGTGGGGAGGTCTCTGGACCTGGCAAAGTTTAATGGTTATAATGAATTGACAGCAGAACTGGAT CAGATTTTTGAATTTCATGGTGAATTAGTTGCCCCTAACAAAGATTGGTTGATTGTTTTTACTGATGATGAGGGTGATATGATGCTTGTAGGAGATGATC CCTGGCAGGAATTCTGTAGTATGGTGCGCAGGATCTTTGTCTTCACTAGAGAGGAGATAAACAGGATGGAGCCGCGATCCCTGAATCTAGAAGCCGAGGG AAATTCACAAAGTGCAGACCAAATGGTTGATTTGATGGGGGATGGAACTTCAAAGCATCTTCCAGCTGTGAGTCCCTAG
AA sequence Show only first row Show all	>Potri.001G066200.12 pacid=42791796 polypeptide=Potri.001G066200.12.p locus=Potri.001G066200 ID=Potri.001G066200.12.v4.1 annot-version=v4.1 MINGSYSVDNKRNGIARGSSSFPVAGEGSEDALYKELWHACAGPLVTVPRQGELVYYFPQGHIEQVEASTNQVADDQQMPAYNLPPKILCRVVNVQLKAE LDTDEVFAQVILLPVAEQDVDLVEKEDLPPPPARPRVHSFCKMLTASDTSTHGGFSVLRRHADECLPPLDMSLQPPAQELVAKDLHGNEWRFRHIFRGQP RRHLLQSGWSLFVSAKKLVAGDAFIFLRGETEELRVGVRRALSQPSNVPSSVMSSHSMHIGILATVWHAVSTGSMFTVYYKPRTSPAEFIIPIDKYRESV KINYAIGMRFKMKFEAEEAPEQRFSGTVIGVEEADPKKWPRSKWRCLKVRWDETSPVHRPDRVSPWKIERALAPSLDPVPGCQSKRHRSNMATSSADSSA PTKKDNEPSRHLQHKEILTLRNTHAGKNYSDSKHNPAQALFQGKDQTAFDNRKLGPDDKIPQVMHGAKLMNLTTGPGTLHESYESTRPFFELNSDDVDRP SKLNETGMFNCHSAPLMYLGHPFNMMASRMEVHVAKDKDIQQQRGSWFSPLPYADNSSHPSGSKPQHLPFQQRNKETSKDGNCKLFGFSLFGNPMAAEPA IIHRHSTEKQQQQINVASDHLKLLGSEGFLEQAKHSKHVRPEEQGNIFQASALHSKDVQGMPEGDSTRRCVKVYKQGTAVGRSLDLAKFNGYNELTAELD QIFEFHGELVAPNKDWLIVFTDDEGDMMLVGDDPWQEFCSMVRRIFVFTREEINRMEPRSLNLEAEGNSQSADQMVDLMGDGTSKHLPAVSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	0	1
AT2G24960			unknown protein		Potri.013G025200 [exp]	2.00	0.7884
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	9.16	0.7536
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	10.48	0.7876
AT3G57910			D111/G-patch domain-containing...		Potri.016G048600 [exp]	12.00	0.7208
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	15.65	0.7173
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	19.69	0.7404
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.014G130300 [exp]	25.41	0.6656
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	29.39	0.6978
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Potri.002G195300 [exp]	30.44	0.6050
AT5G14940			Major facilitator superfamily ...		Potri.004G068500 [exp]	32.84	0.6760

Compare expression of checked genes

Potri.001G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.