Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13290 488 / 1e-172 SOL2, CRN SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3) AT2G31880 203 / 4e-59 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT1G78530 185 / 5e-55 Protein kinase superfamily protein (.1) AT5G62710 188 / 5e-54 Leucine-rich repeat protein kinase family protein (.1) AT2G35620 187 / 1e-53 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT1G31420 183 / 3e-52 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT3G24240 173 / 3e-47 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G55610 171 / 1e-46 BRL1 BRI1 like (.1.2) AT1G08590 171 / 1e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 169 / 5e-46 BRL3 BRI1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163300 [exp] 732 / 0 AT5G13290 484 / 3e-171 SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3) Potri.015G086800 [exp] 223 / 9e-67 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.012G090500 [exp] 219 / 3e-65 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 184 / 2e-52 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 182 / 7e-52 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G380800 [exp] 176 / 2e-51 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.003G105000 [exp] 179 / 1e-50 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G117500 [exp] 176 / 2e-48 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G048800 [exp] 174 / 2e-47 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017963 [exp] 214 / 2e-63 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10041953 [exp] 211 / 2e-62 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10013675 [exp] 211 / 3e-62 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033041 [exp] 208 / 4e-61 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 187 / 2e-53 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 186 / 6e-53 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 185 / 8e-53 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10005569 [exp] 177 / 2e-52 AT1G78530 462 / 2e-164 Protein kinase superfamily protein (.1) Lus10027951 [exp] 171 / 2e-46 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 170 / 4e-46 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G066700.1 pacid=42791627 polypeptide=Potri.001G066700.1.p locus=Potri.001G066700 ID=Potri.001G066700.1.v4.1 annot-version=v4.1 ATGGGGAAAAGAAGATACAGTACTCAAATTAGCAACAACAAAGACACATCTTCACTGCTTTTTCTGTTCATTCTTTGCTTATACTACACAACTGTACAAT GCCAAGAAAGTAGTAAAGTCACACCTCCATTTCCTTCTACACCAACCCATTCCAAGAATGGACTCAAAAGAATACTTGTAAGCATCTTTTTAGGAGTCTT GACTGGATTGACAGGAGCCGTTGTTTTTGCTTTTGTAGTCCGTTTCCTGGTCCGGTACATGAAGAGAACTCCAATTCTCAAAGGCCCGGTTATATTTTCT CCAAAAATCACTCCTAAAAGTCTTCAATCAGCTCTTGAAAATGAGAATCAGTTGCTAGGTTCAAGCTCCAATGGAAAGTATTACAGGACTGTACTGGACA ATGGGCTAACCATTGCTGTCAAGAGGTTTGAGCCATTTGAGATTGGCTCCCCGGAGAGGCAGAGCAAGTCAGTAAAGAGAAGGATACAGCAGGAGCTGGA AATGCTAGCTAGTTTGAGACATCGGAATCTGATGAGTTTAAGGGCTTATGTTCGCGAACCAGATAGGTTCTCTTTGGTTTATGATTGTGTGCCAACTGGG AGTCTTGAAGATGCAATGAACAGAGTGAGAGAGAATGAGTTGCAGCTCGGGTGGGAAGTTCGACTTCGGATTGCCGTTGGGGTTATCAAAGGGCTTAGGT ATCTTCATTTTGATTGTGTCCCTCAGATTTTGCATTATAATTTGAAGCCTAGGAATGTGATTTTGGATGCTGAGTTTGAACCAAGGTTGGCTGATTTTGG ACTGGCTAAGCTTACGCCTAATCTGGATAGAGCTACATCTGGATATAGCGCTCCCGAGTGTTTCCAAAATTGCAGGTATACGGATAAAAGTGATGTTTTC AGCTTTGGGATGATATTGGGCGTTTTGTTAACTGGGAGGGACCCTACCGATCCATTCTTTAGGGAAACTGCTAGTGGGGGTAGTTTGGGTCCCTGGCTTC GGCATTTGCAGCAAGCAGGGGAGGCAAGGGAAGCGCTTGATAAGAGTATTCTTGGGGAAGAAGTTGAGGAAGATGAGATGCTCATGGCAGTGAGAATTGC TGTTGTTTGTCTATCAGATATGCCTGCAGATAGGCCTTCAAGTGATGAGCTTGTCCCCATGCTATCTCAACTGCATAGTTTTTAA
AA sequence Show only first row Show all	>Potri.001G066700.1 pacid=42791627 polypeptide=Potri.001G066700.1.p locus=Potri.001G066700 ID=Potri.001G066700.1.v4.1 annot-version=v4.1 MGKRRYSTQISNNKDTSSLLFLFILCLYYTTVQCQESSKVTPPFPSTPTHSKNGLKRILVSIFLGVLTGLTGAVVFAFVVRFLVRYMKRTPILKGPVIFS PKITPKSLQSALENENQLLGSSSNGKYYRTVLDNGLTIAVKRFEPFEIGSPERQSKSVKRRIQQELEMLASLRHRNLMSLRAYVREPDRFSLVYDCVPTG SLEDAMNRVRENELQLGWEVRLRIAVGVIKGLRYLHFDCVPQILHYNLKPRNVILDAEFEPRLADFGLAKLTPNLDRATSGYSAPECFQNCRYTDKSDVF SFGMILGVLLTGRDPTDPFFRETASGGSLGPWLRHLQQAGEAREALDKSILGEEVEEDEMLMAVRIAVVCLSDMPADRPSSDELVPMLSQLHSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.001G066700 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	5.65	0.8483
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G018900 [exp]	5.74	0.7917
AT2G28150			Domain of unknown function (DU...		Potri.004G216200 [exp]	11.53	0.8123
AT5G40960			Protein of unknown function (D...		Potri.017G064400 [exp]	15.49	0.8386
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	19.18	0.8307
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	23.66	0.7743
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.007G009200 [exp]	24.18	0.7988
AT3G16060			ATP binding microtubule motor ...		Potri.018G079800 [exp]	25.25	0.7700
AT5G23100			Protein of unknown function, D...		Potri.012G058300 [exp]	27.38	0.8151
					Potri.002G250900 [exp]	30.08	0.8200

Compare expression of checked genes

Potri.001G066700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.