Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33550 328 / 4e-112 Trihelix Homeodomain-like superfamily protein (.1) AT2G35640 73 / 3e-14 Trihelix Homeodomain-like superfamily protein (.1) AT4G31270 67 / 2e-12 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G51800 60 / 1e-09 Trihelix Protein kinase superfamily protein (.1) AT1G31310 57 / 6e-09 Trihelix hydroxyproline-rich glycoprotein family protein (.1) AT1G76890 53 / 2e-07 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 49 / 3e-06 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 46 / 3e-05 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G13450 44 / 0.0001 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G10000 43 / 0.0002 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163000 [exp] 554 / 0 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.015G105800 [exp] 233 / 3e-74 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.012G117500 [exp] 69 / 6e-13 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.018G002801 [exp] 57 / 9e-09 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1) Potri.006G279100 [exp] 56 / 2e-08 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.012G132300 [exp] 49 / 4e-06 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1) Potri.001G454500 [exp] 46 / 3e-05 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.012G106650 [exp] 42 / 3e-05 AT2G33550 65 / 8e-14 Homeodomain-like superfamily protein (.1) Potri.008G025600 [exp] 45 / 8e-05 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020182 [exp] 61 / 4e-10 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10026986 [exp] 58 / 4e-09 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10033504 [exp] 52 / 3e-07 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 50 / 1e-06 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10041120 [exp] 50 / 1e-06 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1) Lus10027398 [exp] 47 / 1e-05 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1) Lus10031672 [exp] 47 / 2e-05 AT5G51800 885 / 0.0 Protein kinase superfamily protein (.1) Lus10028584 [exp] 44 / 0.0001 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 43 / 0.0003 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 42 / 0.0007 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G066900.1 pacid=42790438 polypeptide=Potri.001G066900.1.p locus=Potri.001G066900 ID=Potri.001G066900.1.v4.1 annot-version=v4.1 ATGGCTTTAGAGCAGCAATTAAGCTTAACCCCAACTCAAAATCCAGTTGACGGCGAAAGAACTAACGGCGTTGACACCAACATCCGAGACGGCGGGGATG ACGGAAACAAAGCACCGAGACTCCCTCGGTGGACGCGGCAAGAAATTCTAGTACTCATACAGGGCAAGAGAGTGGCAGAAAACAGAGTCCGGAGAGGTCG CGCATCGGGTATGGGCATCGGGTCGGGTCAAATCGAACCGAAATGGGCCTCAGTATCTTCTTACTGTAAAAGACATGGAGTGAACCGAGGACCGGTTCAG TGTCGGAAAAGATGGAGTAATTTAGCAGGTGATTTTAAGAAGATAAAAGAATGGGAGACTTCAATAAGAGAAGAAACGGAGTCCTTTTGGGTTATGAGGA ATGATTTGAGAAGAGAAAGGAAGTTGCCTGGGTTTTTTGATAGGGAGGTATATGATATTCTCGATGGTGGCGGCGGTACGGTCCCGGGATTGGCGCTTGC TTTGGCACCGTCTTCGACGGCGGCGGAGGCGGAGGCAGTAGCGGAGGAGGTGGTTTTTGATAGTGGGCGGAGTGCAGCGGCGGAGGATGGGTTGTTTTCG GATTTTGAGCAGGAGGAGGGAGGAGGGAGTCCGGAGGCTGTAGTTAAGGAGGTGCAACCGATAAAGATGGCGGTGACGGCAGGGGTTGCTAATCCGACAC CGATTTCAGAGAAGCAGTACCAGCCAGCTCCACGAGCAAGTCAAGCTCAAGTTCCACCAAATGATAAAAGGCCCGCCACAAATCCTGAGATGGGGTCTGC TTCGCATGAGGAACGGAAACGGAAACGGTTTGTGATAGATGGTGATGAGGAAACCATCAGTTTGCAGAGTCATTTGATTGATGTCTTGGAAAGGAATGGC AAAATGCTGACTGCTCAGCTTGAAGCTCAGAACACAAATTTTCAGCTGGACCGGGAGCAGAGGAAGGATCATGCAGATGGCTTGGTTGCTGTTCTCAATA AGCTCGCGAATGCGCTTGGGAAAATAGCGGATAAGTTGTAG
AA sequence Show only first row Show all	>Potri.001G066900.1 pacid=42790438 polypeptide=Potri.001G066900.1.p locus=Potri.001G066900 ID=Potri.001G066900.1.v4.1 annot-version=v4.1 MALEQQLSLTPTQNPVDGERTNGVDTNIRDGGDDGNKAPRLPRWTRQEILVLIQGKRVAENRVRRGRASGMGIGSGQIEPKWASVSSYCKRHGVNRGPVQ CRKRWSNLAGDFKKIKEWETSIREETESFWVMRNDLRRERKLPGFFDREVYDILDGGGGTVPGLALALAPSSTAAEAEAVAEEVVFDSGRSAAAEDGLFS DFEQEEGGGSPEAVVKEVQPIKMAVTAGVANPTPISEKQYQPAPRASQAQVPPNDKRPATNPEMGSASHEERKRKRFVIDGDEETISLQSHLIDVLERNG KMLTAQLEAQNTNFQLDREQRKDHADGLVAVLNKLANALGKIADKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	0	1
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	1.00	0.8675
AT4G33420			Peroxidase superfamily protein...		Potri.018G136900 [exp]	3.46	0.8501
AT1G03055			unknown protein		Potri.005G216400 [exp]	3.46	0.8218
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	4.58	0.8038
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.001G460400 [exp]	4.89	0.8007
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	5.74	0.8340
AT2G46420			Plant protein 1589 of unknown ...		Potri.012G001700 [exp]	6.24	0.7892
					Potri.008G084200 [exp]	7.74	0.7893
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	8.12	0.8101
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	8.48	0.7652	SDG913,EMB173.1

Compare expression of checked genes

Potri.001G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.