Plant FIBer expression Database

Potri.001G067100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1)
AT1G78450 130 / 1e-37 SOUL heme-binding family protein (.1)
AT1G78460 118 / 9e-33 SOUL heme-binding family protein (.1)
AT5G20140 54 / 1e-08 SOUL heme-binding family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G379000
[exp]
136 / 9e-40 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1)
Potri.015G080000
[exp]
115 / 1e-31 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1)
Potri.012G088400
[exp]
110 / 1e-29 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1)
Potri.010G044200
[exp]
89 / 2e-21 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1)
Potri.016G098500
[exp]
58 / 6e-10 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1)
Potri.016G109400
[exp]
57 / 8e-10 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1)
Potri.018G073501
[exp]
51 / 2e-07 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012559
[exp]
147 / 8e-43 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1)
Lus10041532
[exp]
143 / 3e-42 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1)
Lus10001247
[exp]
100 / 5e-26 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1)
Lus10042093
[exp]
100 / 1e-25 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1)
Lus10013045
[exp]
81 / 3e-18 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1)
Lus10017193
[exp]
61 / 2e-11 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1)
Lus10029117
[exp]
0 / 1 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0319 SHS2 PF04832 SOUL SOUL heme-binding protein
Representative CDS sequence
>Potri.001G067100.1 pacid=42791786 polypeptide=Potri.001G067100.1.p locus=Potri.001G067100 ID=Potri.001G067100.1.v4.1 annot-version=v4.1
ATGGTTCGAGGAAAGGGCCACATGGGTTCGGCCGGCGAAGGGATTGGTTTGGTCTTCTTGACCCTGGCTTTGTGCATTGCTATCATGTTTGAGCAATGTC
AAGGTCGCAGTGCCTATGCAGAGCCAGCAAACTGTCTACGCCTGGAGTGTGCTCCATATCAGGTGATTCACAGTCAAAAAGATTATGAAATTAGAAGTTA
CAGAACAGCGACTTGGATTTCTACTTCACCAGTCAACTCTAACTCGTACAAGGATGCAGTTGGTCATGGTTTCAACATCCTCGCTACGTATATTCAAGGA
AACAATGATCAGGCAGCAAACATCAACATGACAGCTCCAGTTTTGGTAGATATGTTTTCATCAACCGCGAGTTCCCGCAACACAACCTTTACTGTGCACC
TCTATTTGCCACAAAAGTACCAAAATAACCCTCCTCTCTCCCGTCAAGTACATCCAGTGAAGCTGCCTAAACACCGCCATGCAGCTGTGAAGAGGTTTGG
AGGTTTTATGAACGACACCAACATCCCTGGACAAGTTTTGGCGTTGAAGAAAAGCCTCGAGGGCACCCCCTGGGAATCATCCATAGCAAGGACACAAAGC
AGGGGTCGTGTGCCTTGCAGTGTTGCTGGCTACAACTCGCCCTACGAATATGAGAATCGTGCAAATGAAGTCATGTTTTGGTTTGATTAA
AA sequence
>Potri.001G067100.1 pacid=42791786 polypeptide=Potri.001G067100.1.p locus=Potri.001G067100 ID=Potri.001G067100.1.v4.1 annot-version=v4.1
MVRGKGHMGSAGEGIGLVFLTLALCIAIMFEQCQGRSAYAEPANCLRLECAPYQVIHSQKDYEIRSYRTATWISTSPVNSNSYKDAVGHGFNILATYIQG
NNDQAANINMTAPVLVDMFSSTASSRNTTFTVHLYLPQKYQNNPPLSRQVHPVKLPKHRHAAVKRFGGFMNDTNIPGQVLALKKSLEGTPWESSIARTQS
RGRVPCSVAGYNSPYEYENRANEVMFWFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17100 SOUL heme-binding family prote... Potri.001G067100
[exp]
0 1
AT2G43760 molybdopterin biosynthesis Moa... Potri.001G272100
[exp]
6.55 0.7633
AT4G09830 Uncharacterised conserved prot... Potri.001G003400
[exp]
7.34 0.8388
AT5G59400 unknown protein Potri.001G241400
[exp]
8.94 0.8480
AT4G24770 CP31, ATRBP33, ... ARABIDOPSIS THALIANA RNA BINDI... Potri.001G340800
[exp]
10.09 0.8679
AT1G14140 Mitochondrial substrate carrie... Potri.010G165900
[exp]
12.48 0.8450
AT1G16080 unknown protein Potri.003G185901
[exp]
16.24 0.8594
AT4G39630 unknown protein Potri.007G085100
[exp]
16.58 0.7969
AT3G18140 Transducin/WD40 repeat-like su... Potri.016G052800
[exp]
16.91 0.8272
Potri.001G268000
[exp]
19.18 0.7990
AT1G49510 EMB1273 embryo defective 1273 (.1) Potri.005G149500
[exp]
20.19 0.8443

Potri.001G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.