Plant FIBer expression Database

Potri.001G067200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G162801
[exp]
191 / 7e-58 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G067200.1 pacid=42787864 polypeptide=Potri.001G067200.1.p locus=Potri.001G067200 ID=Potri.001G067200.1.v4.1 annot-version=v4.1
ATGCAAAGAAAGCAATATTCCAGTTATGAATCTCTCAAGGAAGAACCTTTAAGTGAAGCATTTGAGGTTTCTGTGACAAAGACCATTGTGCAACGAGTTC
AAAACATCGAGTCGAAAGGGCCTCTAGAGAGAAGATGCAGCCCTGGACTTATAAATACACCTCAAGAGAAAAGGCCATGTTATGATGATGGTCAGAGCAT
GGAGTTAGATGCTCCTAAACTCGACATTTGCAAAAAAGAAGTTGAAGAAGAGTCAACAGGGCCGAGGGAGAGAAGGCCATATTATGATGGAGATCAGAGG
TGGGAGTTAAATGCTCCTAAACATGATGAGTGCAAGAAAGAAACCAGAGATTATAATAGGAAGAGACAGTTAGAATCGACCAGAGATAATGCTGTCAAGA
GAAGAACCTGCATGAATCATTCATTGCAAGAATGA
AA sequence
>Potri.001G067200.1 pacid=42787864 polypeptide=Potri.001G067200.1.p locus=Potri.001G067200 ID=Potri.001G067200.1.v4.1 annot-version=v4.1
MQRKQYSSYESLKEEPLSEAFEVSVTKTIVQRVQNIESKGPLERRCSPGLINTPQEKRPCYDDGQSMELDAPKLDICKKEVEEESTGPRERRPYYDGDQR
WELNAPKHDECKKETRDYNRKRQLESTRDNAVKRRTCMNHSLQE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G067200
[exp]
0 1
AT2G34790 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST ... Potri.011G166601
[exp]
7.74 0.8095
Potri.003G046750
[exp]
12.24 0.7256
Potri.002G111832
[exp]
26.83 0.6950
AT5G15710 Galactose oxidase/kelch repeat... Potri.004G112400
[exp]
31.08 0.6162
AT1G03055 unknown protein Potri.005G216400
[exp]
32.12 0.6820
AT1G58602 LRR and NB-ARC domains-contain... Potri.011G031312
[exp]
32.86 0.6781
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Potri.008G099201
[exp]
36.94 0.6666
AT5G12260 unknown protein Potri.012G123450
[exp]
45.07 0.6632
Potri.013G064250
[exp]
46.79 0.6449
Potri.001G382300
[exp]
49.44 0.6637

Potri.001G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.