Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57820 810 / 0 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G39550 734 / 0 ORTH1, VIM3 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G57800 719 / 0 ORTH3, VIM5 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66040 716 / 0 ORTH4, VIM4 VARIANT IN METHYLATION 4, ORTHRUS 4, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66050 715 / 0 ORTH5, VIM2 VARIANT IN METHYLATION 2, ORTHRUS 5, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G08590 459 / 8e-157 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT5G13960 89 / 2e-18 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G35160 76 / 7e-14 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 74 / 1e-13 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT4G13460 74 / 2e-13 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162400 [exp] 1182 / 0 AT1G57820 813 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.002G237950 [exp] 92 / 5e-19 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 91 / 7e-19 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.008G173100 [exp] 81 / 8e-16 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 81 / 2e-15 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G083100 [exp] 78 / 1e-14 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 77 / 2e-14 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 71 / 1e-12 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.001G036800 [exp] 71 / 1e-12 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039127 [exp] 743 / 0 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038731 [exp] 383 / 4e-125 AT1G57800 611 / 0.0 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031984 [exp] 93 / 2e-19 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 86 / 4e-17 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10014457 [exp] 74 / 2e-13 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10023714 [exp] 74 / 2e-13 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10040150 [exp] 74 / 3e-13 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10003017 [exp] 73 / 4e-13 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10035115 [exp] 72 / 1e-12 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001011 [exp] 70 / 4e-12 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Potri.001G067700.2 pacid=42790067 polypeptide=Potri.001G067700.2.p locus=Potri.001G067700 ID=Potri.001G067700.2.v4.1 annot-version=v4.1 ATGGAACTACCATGCGACGGAGCGGGCATTTGCATGGCCTGCAAAAACAAGCCACCAAATGAAGAAACCCTCAATTGCAAAACATGTGCCACCCCCTGGC ACGCCACGTGTCTCGTCTATCCACCTCAGGAGTTAGCAGATACGCTCCAATGGGAGTGCCCTGACTGCTCCATGATAAATCCGCCTTCCACTTCCGCTGT CGCCGCCGGACGATCGGAGGAGGCCGGAGAACTCATCGCCTCGATTCGGAAGATCGAGGACGATAAGTCCTTGACCGAACAGGAGAAGGCAAAGAAACGG CAGAAGCTTTTGAGTGGAGCCACCGCAGGTCCGTCGCCATCGGACGGAGATGAAAAGAAAGAGAAGAACGATGTGCTTGATATACTTGACAAGGAGTTAA CTTGCTCTTTCTGTATGCAAATGCTGGATAGACCTGTTACGACACCATGTGGTCATAACTTTTGCCTGAAGTGCTTCCAGAGATGGATTGGACAAGGCAA ACGTACTTGTGCATATTGCCGTGTACAAATCCCACCCAAGATGGCAAGCCAACCTCGCATCAATTCCACACTTGTTATTGCCATACGTATGGCAAGGATG TCAAGATCCAGCAATGCTGGGGGGGCTCCAAAGGTATATCATTTTGTCCAGAACCAAAACAGGCCGGACAAAGCATACACAACGGAGCGTGCTAAGAGAG CTGGCAAGGCTAATGCTTGTAGCGGGAAGATCTTTGTCACAGTTCCTCCTGATCACTTTGGTCCAATTCCTGCTGAGAACGACCCAGAAAGAAATATGGG TGTTTTGGTGGGAGAGATATGGGAGGATAGGCTGGCATGTAGGCAATGGGGTGCCCATCTCCCCCATGTTGCAGGAATTGCTGGTCAGTCTACTCATGGT TCACAATCAGTGGCTCTCTCTGGAGGTTATTTAGACGACGAGGATCATGGTGAATGGTTCCTTTACACTGGGAGTGGAGGAAGGGACCTGAGCGGCAATA AACGTACAAACAAGGATCAATCTTTTGATCAAAAGTTTGACAAGATGAATGAGGCCTTACGAGTAAGCTGCCTAAAGGGCTATCCTGTAAGAGTCGTTAG GTCTCACAAAGAGAAGCGATCATCTTATGCCCCAGAAACAGGTGTACGATATGATGGGGTTTATAGAATCGAAAAGTGTTGGCGTAAGAATGGAATACAG GGCTTTAAAGTTTGTAGGTATCTTTTTGTCAGATGTGACAATGAGCCTGCCCCATGGACCAGTGATGTTCAAGGGGACCGTCCAAGGGCCCTTCCTGTCA TCAAGGAGCTAAAGAATGCAATTGATATAACTGAAAGGAAGGGGTCCCCATCCTGGGACTATGATGAGGAAAAAAGTTGCTGGATGTGGAAAAAGCCTCC GCCAGTCAGTAAAAAAAGAGTTGCTGATAGTGGAGATCCAGAAGATAGCAAAGTGATGAGGACAATTAAGCGGCAAAGGCAGAATGTATCGGTGAGAGAA AAACTTTTGAAAGAGTTTAGTTGTCAAATCTGTCGGAAGGTGATGGTGTATCCAATTACTACTCCATGCGCGCATAATTTCTGCAAAGCATGTCTAGAGG GTGCCTTTGCTGGCCAAAGTTTCACTAGGCAGAGAGGTCAGGGCAGACGGACACTAAGAGTGCAAAAGAATGTTATGAAATGTCCATCTTGTATCATTGA CATAGCTGACTTTCTTCAGAACCCACAGGTGAACCGGGAGTTGATGGGTGTAATAGAATCACTACAACGGCAAGCGGAGGAGGAAAAGATGGACGAAAAT TCAGAAGGTTGTAGTGAAGAAATTGATAATGCTATTGAGCAACCAGACCTGGTTTCTGATGCAGTCAATGACCCAATTGCCGAAGAGCCAAAGGATGATT CCCAAAAGGCATAG
AA sequence Show only first row Show all	>Potri.001G067700.2 pacid=42790067 polypeptide=Potri.001G067700.2.p locus=Potri.001G067700 ID=Potri.001G067700.2.v4.1 annot-version=v4.1 MELPCDGAGICMACKNKPPNEETLNCKTCATPWHATCLVYPPQELADTLQWECPDCSMINPPSTSAVAAGRSEEAGELIASIRKIEDDKSLTEQEKAKKR QKLLSGATAGPSPSDGDEKKEKNDVLDILDKELTCSFCMQMLDRPVTTPCGHNFCLKCFQRWIGQGKRTCAYCRVQIPPKMASQPRINSTLVIAIRMARM SRSSNAGGAPKVYHFVQNQNRPDKAYTTERAKRAGKANACSGKIFVTVPPDHFGPIPAENDPERNMGVLVGEIWEDRLACRQWGAHLPHVAGIAGQSTHG SQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQKFDKMNEALRVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGVYRIEKCWRKNGIQ GFKVCRYLFVRCDNEPAPWTSDVQGDRPRALPVIKELKNAIDITERKGSPSWDYDEEKSCWMWKKPPPVSKKRVADSGDPEDSKVMRTIKRQRQNVSVRE KLLKEFSCQICRKVMVYPITTPCAHNFCKACLEGAFAGQSFTRQRGQGRRTLRVQKNVMKCPSCIIDIADFLQNPQVNRELMGVIESLQRQAEEEKMDEN SEGCSEEIDNAIEQPDLVSDAVNDPIAEEPKDDSQKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.001G067700 [exp]	0	1
AT1G20925			Auxin efflux carrier family pr...		Potri.002G003500 [exp]	2.82	0.7102
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	3.31	0.7054
AT3G04860			Plant protein of unknown funct...		Potri.005G050000 [exp]	4.12	0.7667
AT4G14650			unknown protein		Potri.010G081000 [exp]	29.15	0.6934
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.007G104801 [exp]	39.79	0.7046
AT5G37730			unknown protein		Potri.004G089700 [exp]	51.59	0.6547
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	51.61	0.6281	TIP4.1
AT3G51670			SEC14 cytosolic factor family ...		Potri.016G127700 [exp]	57.23	0.6732
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	68.94	0.6786
AT1G62510			Bifunctional inhibitor/lipid-t...		Potri.003G111400 [exp]	84.91	0.6587

Compare expression of checked genes

Potri.001G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.