Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GLYRS.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29880 1203 / 0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) AT1G29870 583 / 0 tRNA synthetase class II (G, H, P and S) family protein (.1) AT3G44740 251 / 1e-78 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162300 [exp] 1359 / 0 AT1G29880 1192 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042096 [exp] 1227 / 0 AT1G29880 1174 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10029203 [exp] 1116 / 0 AT1G29880 1067 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10008792 [exp] 1110 / 0 AT1G29880 1057 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10036929 [exp] 194 / 4e-53 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036930 [exp] 99 / 2e-24 AT1G29880 92 / 4e-23 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [poplar] [flax] S15_NS1 PF00458 [poplar] [flax] WHEP-TRS WHEP-TRS domain CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G067800.1 pacid=42789875 polypeptide=Potri.001G067800.1.p locus=Potri.001G067800 ID=Potri.001G067800.1.v4.1 annot-version=v4.1 ATGGCCGCCTCCGAGTATTCCCTCCGCCGCGCTCTCGTCGAGAAACAATCCTCAATCGAATCTCAAGGAAACGCTGTCCGTGCACTCAAAGCCTCTAATG CTGTAAAGGCTGATGTCGATGAGGCAATTGAAAAACTGAACGCCTTGAAATTAGAGAAGTCTTCGATTGAGAAACAACTTCAAGCCGCCGTTAGTGGTAA TCCTGATGGTTCTGTTAATAAGGAAGCATTCCGTCAAGCTGTGGTTAATACACTTGAACGGAGGTTGTTTTTTATCCCTTCTTTTAAGATTTATCGTGGT GTTGCTGGGCTTTATGATTATGGTCCTCCTGGTTGCGCCGTCAAGTCCAATGTTCTTGCCTTTTGGCGCCAGCATTTCGTTCTCGAGGAGAATATGTTGG AGGTTGACTGCCCATGTGTGACGCCCGAGGTTGTTCTCAAAGCATCTGGTCATGTGGATAAATTCACGGACCTTATGGTTAAGGATGAGAAAACTGGGAC TTGCTATCGGGCGGACCACTTGCTTAAGGACTTCTGTAACGAGAAGATTCAGAAAGATCTTAGCATAAGTGCAGAGAAGGCTGCAGAATTGAAACATGTA CTTGCTGTCCTGGATGATCTCTCTGCTGAAGAGCTGGGTGCGAAAATCAAGGAGTATGGTATTACAGCTCCAGACACAAAGAATCCACTTTCTGATCCTT ATCCATTCAACCTGATGTTTCAAACATCAATCGGTCCTTCTGGTTTGAGCCCTGGGTATATGCGCCCTGAAACAGCTCAGGGCATATTTGTTAACTTTAA GGACTTGTACTATTACAATGGGAACAAGCTACCCTTTGCTGCTGCTCAAATTGGCCAGGCTTTCAGAAATGAGATTTCTCCCCGCCAAGGTCTTTTAAGA GTTCGTGAATTCACATTAGCAGAGATTGAGCACTTTGTTGATCCTGAGGACAAATCTCACCCAAAATACTCTGAAGTTGCAGATCTTGAATTTTTGATGT TCCCAAGAGAACAACAAGTCTCTGGCCAATCTGCAAAGAAAATTCGCCTTGGTGAAGCTGTTTCTAAGGGAATTGTCAACAATGAAACTCTTGGCTATTT CATTGGGAGAGTGTATCTTTTTCTAACTCATCTTGGTATAGACAAAGACCGATTGCGATTCCGGCAACATCTTGCAAATGAAATGGCCCACTATGCTGCA GACTGTTGGGATGCTGAGATTGAGTCTTCATATGGTTGGATTGAATGTGTTGGTATTGCAGATAGATCTGCATATGACTTGCGTGCTCACACGGACAAAA GTGGAGTTCCTCTTGTGGCCCATGAAAAATTTTCAGAACCTAAGGAAGTGGAGAAATTGGTTATAGCACCAGTGAAGAAAGAGCTGGGGCTTTCTTTCAA GGGCAACCAAAAAAAAGTGGTTGAAGCTTTGGAGGCAATGAATGAAAAGGAAGCTTTGGACATGAAGTCCTCTCTGGAAACCAAAGGGGAGGTAGAATTT TATGTCTGCACTCTTGGGGAAAATGTGACAATTAAAAAGAGCATGGTATCAATTTCAAAGGAGAAGAAGAAGGAACACCAGAGAACTTTCACACCATCAG TAATTGAGCCATCTTTTGGCATTGGCCGTATAATCTACTGTCTCTATGAACACTCTTTCTACATGAGGTCCAGTAAAGCCGGGGATGAGCAGCAGAATGT TTTCCGTTTCCCTCCTCTTGTGGCACCTATAAAGTGCACTGTTTTTCCTCTCGTCCAGAATCAGCAGTATGAGGATGTTGCCAAAATCATTTCTAAGTCA TTGACTGCTGCTGGAATCTCTCATAAGATTGATATTACAGGCACCTCAATTGGTAAACGATATGCAAGAACAGATGAACTGGGTGTCCCCTTTGCAATAA CTGTTGATTCAACATCCTCAGTGACAATCAGAGAGAGGGATAGCAAGGATCAAATCCGTGTTAATGTGGAAGAAGCAGCATCAGTTGTGAAGTCGGTAAC TGATGGACACACGACGTGGGCCGATGCGTGGGCAAATTTCCCCCACCACTCCTCTGGATCTGTAGAGGATTAG
AA sequence Show only first row Show all	>Potri.001G067800.1 pacid=42789875 polypeptide=Potri.001G067800.1.p locus=Potri.001G067800 ID=Potri.001G067800.1.v4.1 annot-version=v4.1 MAASEYSLRRALVEKQSSIESQGNAVRALKASNAVKADVDEAIEKLNALKLEKSSIEKQLQAAVSGNPDGSVNKEAFRQAVVNTLERRLFFIPSFKIYRG VAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCNEKIQKDLSISAEKAAELKHV LAVLDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLR VREFTLAEIEHFVDPEDKSHPKYSEVADLEFLMFPREQQVSGQSAKKIRLGEAVSKGIVNNETLGYFIGRVYLFLTHLGIDKDRLRFRQHLANEMAHYAA DCWDAEIESSYGWIECVGIADRSAYDLRAHTDKSGVPLVAHEKFSEPKEVEKLVIAPVKKELGLSFKGNQKKVVEALEAMNEKEALDMKSSLETKGEVEF YVCTLGENVTIKKSMVSISKEKKKEHQRTFTPSVIEPSFGIGRIIYCLYEHSFYMRSSKAGDEQQNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKIISKS LTAAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTSSVTIRERDSKDQIRVNVEEAASVVKSVTDGHTTWADAWANFPHHSSGSVED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.001G067800 [exp]	0	1	Pt-GLYRS.1
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	5.29	0.9580
AT1G02475			Polyketide cyclase/dehydrase a...		Potri.014G115400 [exp]	8.88	0.9201
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	9.38	0.9549	CYP97C4
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	12.64	0.9455	PtrcGR1,Pt-GR.3
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	14.83	0.9266
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	18.73	0.9496
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	19.39	0.9434
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	23.06	0.9450
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	24.00	0.9431
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	25.45	0.9464	Pt-HCF106.1

Compare expression of checked genes

Potri.001G067800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.