Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13430 413 / 3e-147 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT5G13440 411 / 2e-146 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT4G03280 58 / 8e-10 PGR1, PETC PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162200 [exp] 492 / 1e-178 AT5G13430 417 / 8e-149 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.019G118500 [exp] 51 / 2e-07 AT4G03280 318 / 4e-111 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Potri.013G148900 [exp] 51 / 2e-07 AT4G03280 311 / 3e-108 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031982 [exp] 383 / 2e-135 AT5G13430 379 / 4e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10035118 [exp] 383 / 2e-135 AT5G13430 379 / 8e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041870 [exp] 382 / 1e-134 AT5G13430 378 / 1e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041513 [exp] 377 / 8e-133 AT5G13430 376 / 9e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10012580 [exp] 374 / 2e-131 AT5G13430 373 / 2e-131 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10028416 [exp] 267 / 1e-91 AT5G13440 265 / 3e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10039739 [exp] 56 / 6e-09 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10018521 [exp] 56 / 7e-09 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10028417 [exp] 0 / 1 AT5G13430 57 / 4e-16 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [poplar] [flax] ISP-domain PF00355 [poplar] [flax] Rieske Rieske [2Fe-2S] domain CL0300 [poplar] [flax] TAT PF02921 [poplar] [flax] UCR_TM Ubiquinol cytochrome reductase transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.001G067900.1 pacid=42787730 polypeptide=Potri.001G067900.1.p locus=Potri.001G067900 ID=Potri.001G067900.1.v4.1 annot-version=v4.1 ATGTTGAGAGTAGCAGGGAGGAGGCTCTCATCTTTACCATGGAGGTCCTCGCAGTCGCCGACAACCTCCGCCTTCGTCTCTCGAAACACTGCTTTCGTCA GCGATGATGGTCGTGATTCTGCTGCCTCTTCCAGACCCATCCTCTCCCCTTATCAATTCTCCTTCCCTCCAGATCTAATCAGAGGGTTTTCTTCTGGAGC CCTTACTTCAGGACATGATATGGGTATCATATCAGATCTCCCGCCTACTGTAGCAGCTGTGAAGAACCCTACCTCAAAGATTGTCTATGACGAGCACAAT CATGAGCGTTATCCACCTGGTGACCCCAGCAAACGTGCCTTTGCCTATTTTGTCTTGACAGGTGGCCGGTTTGTGTATGCCTCCTTAATCCGTCTTCTGG TCCTCAAGTTTGTTCTGAGCATGTCTGCTAGCAAAGATGTCCTTGCCATGGCCTCCCTTGAGGTTGATCTCTCTAGCATCGAGCCTGGCTCAACTGTTAC AGTGAAGTGGCGTGGAAAGCCAGTTTTCATCAGGAGACGAACCGAAGACGATATTAAGCTAGCTAACAGTGTTGATCTTGCATCCCTTCGTGACCCGCAG GAGGATGCTGCCAGGGTCAAGAATCCAGAATGGCTTGTGGTTGTTGGGGTCTGCACCCACTTGGGGTGCATTCCATTACCTAATGCTGGTGATTTTGGTG GCTGGTTTTGTCCTTGCCATGGATCACACTATGACATCTCTGGCAGGATTCGCAAGGGTCCAGCACCCTATAATTTAGAGGTCCCCACTTACAGTTTCAT GGAGGAGAACAAGCTACTTGTTGGATGA
AA sequence Show only first row Show all	>Potri.001G067900.1 pacid=42787730 polypeptide=Potri.001G067900.1.p locus=Potri.001G067900 ID=Potri.001G067900.1.v4.1 annot-version=v4.1 MLRVAGRRLSSLPWRSSQSPTTSAFVSRNTAFVSDDGRDSAASSRPILSPYQFSFPPDLIRGFSSGALTSGHDMGIISDLPPTVAAVKNPTSKIVYDEHN HERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEDDIKLANSVDLASLRDPQ EDAARVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLVG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.001G067900 [exp]	0	1
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.009G116000 [exp]	1.41	0.8650
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	5.47	0.7960	SDH2.1
AT1G01170			Protein of unknown function (D...		Potri.006G051900 [exp]	6.00	0.8355	ATOZI1.1
AT1G67250			Proteasome maturation factor U...		Potri.006G249600 [exp]	9.05	0.8410
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.012G036200 [exp]	9.79	0.8272
AT1G52855			unknown protein		Potri.019G104100 [exp]	11.13	0.7438
AT2G34250			SecY protein transport family ...		Potri.001G387600 [exp]	12.24	0.7766
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.008G176500 [exp]	13.41	0.7570	TIM17.2
AT2G31490			unknown protein		Potri.006G077400 [exp]	13.41	0.7882
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	15.42	0.7689

Compare expression of checked genes

Potri.001G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.