Plant FIBer expression Database

Potri.001G068500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64680 90 / 6e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018951
[exp]
153 / 2e-46 AT5G64680 81 / 8e-19 unknown protein
Lus10011265
[exp]
139 / 2e-40 AT5G64680 67 / 3e-13 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G068500.1 pacid=42788863 polypeptide=Potri.001G068500.1.p locus=Potri.001G068500 ID=Potri.001G068500.1.v4.1 annot-version=v4.1
ATGGATGATGTTGAGGAGGTGGAGGGTTACAAGCTTGAACCAGGATTTGAAGAAGATTCGAGGGAACCATTGGCTGATATTAGTTTGTCAGATTCGACTG
AGCTCTGGCTCATTCAATGGCCTATTAATGAACTTCCTGATTTTAATGGGAAAGAACTATCGCTCAGTCTTGATCAGGATGGATGTTTGGGAAGTTTCGA
GGCATCTCCAGGGAAATCATTTGATCTGGTCAGCTGCTCTGCTCAAGGGCTAGATGCAACGGTTTTCCTTTCTTCTGAATTGGAAACGAAGATTGTTGGT
AAAATTTCAAGGCAAGTTTCGCTTGTGCATTATCCTGACCCTAAAGAACTTGAGAAACAAGAAGCAGAAAAGAAATCAAAACGTTCATATCAGATGTCTG
CTGGATCTTCATTGATGAATTCTTCCCTCCATTCTGGAACTACAACCCCAAGTTCCAAGCTGCGAAACTCACAGTTGTCAAGGGGACATGCTGCGTCTAC
ACATAGTAGCAGACATAAGAGTTCCTTGTCTGAAGCTGGGGAGCAATCAAATTCTAAACAAAGGCGTATGCATAATCGCAGTGGATCCACAGATCGGTCT
ACTCTAGACTCAGGAAGAGGTCATAGTGGTCATGCCTACTCAGGGTCCTCAGGGCTTTCACACCAAGGGAAATCGGAGGAGATATCAAATGAGTGA
AA sequence
>Potri.001G068500.1 pacid=42788863 polypeptide=Potri.001G068500.1.p locus=Potri.001G068500 ID=Potri.001G068500.1.v4.1 annot-version=v4.1
MDDVEEVEGYKLEPGFEEDSREPLADISLSDSTELWLIQWPINELPDFNGKELSLSLDQDGCLGSFEASPGKSFDLVSCSAQGLDATVFLSSELETKIVG
KISRQVSLVHYPDPKELEKQEAEKKSKRSYQMSAGSSLMNSSLHSGTTTPSSKLRNSQLSRGHAASTHSSRHKSSLSEAGEQSNSKQRRMHNRSGSTDRS
TLDSGRGHSGHAYSGSSGLSHQGKSEEISNE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64680 unknown protein Potri.001G068500
[exp]
0 1
AT4G38150 Pentatricopeptide repeat (PPR)... Potri.004G209500
[exp]
1.41 0.8584
AT5G15750 Alpha-L RNA-binding motif/Ribo... Potri.017G101200
[exp]
2.00 0.8413
AT5G06360 Ribosomal protein S8e family p... Potri.006G203400
[exp]
2.44 0.8336
AT5G16930 AAA-type ATPase family protein... Potri.011G143300
[exp]
4.69 0.8496
AT5G11630 unknown protein Potri.006G237800
[exp]
5.74 0.8451
AT3G46210 Ribosomal protein S5 domain 2-... Potri.018G043600
[exp]
7.14 0.8019
AT5G22100 RNA cyclase family protein (.1... Potri.009G016000
[exp]
7.41 0.8352
AT5G48240 unknown protein Potri.014G170500
[exp]
9.53 0.8111
AT1G27390 TOM20-2 translocase outer membrane 20-... Potri.001G054900
[exp]
11.48 0.8120 Pt-TOM20.1
AT1G80750 Ribosomal protein L30/L7 famil... Potri.003G180700
[exp]
11.53 0.8308

Potri.001G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.