Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13400 1003 / 0 Major facilitator superfamily protein (.1) AT3G54140 428 / 9e-143 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 416 / 5e-138 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 412 / 2e-136 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 405 / 1e-133 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G68570 367 / 7e-119 Major facilitator superfamily protein (.1) AT2G02020 363 / 8e-118 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G46040 357 / 5e-115 Major facilitator superfamily protein (.1) AT5G46050 348 / 1e-111 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT3G21670 345 / 2e-110 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111800 [exp] 431 / 1e-143 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 427 / 2e-142 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 422 / 2e-140 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 422 / 2e-140 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 417 / 3e-138 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 409 / 3e-135 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 397 / 2e-130 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111900 [exp] 390 / 4e-128 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 387 / 2e-126 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035516 [exp] 417 / 2e-138 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 416 / 9e-138 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 412 / 3e-136 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 401 / 7e-132 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 399 / 4e-131 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 402 / 2e-130 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 395 / 6e-130 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10000670 [exp] 393 / 6e-129 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 390 / 5e-128 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10006125 [exp] 387 / 1e-126 AT3G54140 526 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G068600.1 pacid=42788369 polypeptide=Potri.001G068600.1.p locus=Potri.001G068600 ID=Potri.001G068600.1.v4.1 annot-version=v4.1 ATGGGGCTTCATCGTGGGACCATTGAAGTTGCATGTGAAACATTCACCCACTTAAGCTCCGGTACTGCAGCTAGGGAATTAGCCAGAGACATGGGTTCCG GTGAAATAAAGTCACCAGAAGGTCTACCAGAGACACCAGCAACATATGATGGAGTTTCAAACCCAATTCATAGCAAGAAGCTTGGAATTTACTTCCTCGA GTCCGACAATAGGAGGATGGCTTTTGGCCGTGGATATACTGGAGGAACTACTCCTGTTGACATCCATGGGAAGCCTATTCCTGACCTCTCGAAGACAGGT GGCTGGATTGCTGCCTTATTCATTTTTGGGAATGAAATGGCAGAGAGGATGGCTTACTTTGGCCTCTCTGTTAACATGGTGGCCTTCATGTTCTATATTA TGCACCGACCCTTTACCAGTTCATCCAATGCAGTGAACAATTTCTTAGGAATTTCTCAAGTTTCCTCTGTCCTTGGCGGATTTCTTGCAGATGCGTATCT CGGTCGATATTGGACAATTGCAATTTTCACAACAATCTATCTTGCGGGCTTGACAGGTATAACCTTGTGTGCAACAATGAATATTTTCATGCCGGACCAG GGTCAATGCGATCAGCTATCCTTGCTTTTGGGTAACTGCGAGCCAGCGAAATCATGGCAGATGCTCTATCTTAACACAGTTCTTTATGTGACTGGATTTG GAGCCGCAGGTATAAGGCCGTGTGTTTCTTCATTCGGAGCCGATCAGTTTGATGAAAGAGGTGAAAATTACAAGTCTCATCTGGATAGGTTTTTCAACTT CTTTTATCTTTCTGTAACTATTGGAGCAATAGTGGCCTTCACTTTAGTAGTCTACATTCAAATGAAACATGGATGGGGATCTGCCTTTGGTTCACTGGCC ATAGCTATGGGCATGTCAAACATGTTATTCTTTATCGGTACTCCTTTGTATAGGCATAGATTGCCAGGAGGCAGTCCACTAACAAGAGTTGCCCAAGTTC TGGTCGCGGCCTTTCAGAAGAGAAAAGCCTCGTTTTCCAGCAGCGAGTTAATAGGCCTTTATGAGGTTCCTGGCAAACGTTCTGCTATAAAGGGTAGTGG AAAGATAGCACATACAGATGACTTCAGATGTCTGGACAAGGCAGCATTGCAATTGAAGGAAGATGGTGTAGATCCAAGTCCTTGGAGGCTTTGTACGGTG ACTCAAGTGGAGGAAGTCAAGATACTTATAAAGCTTGTTCCAATACCAGCTTGCACAATAATGCTCAATCTAATCTTAACAGAGTATCTGACTCTATCAG TACAGCAGGCATATACTTTGAATACACATTTGGGTCATCTCAAACTTCCAGTAACAAGCATGCCCGTGTTTCCTTGCCTCAGTATATTCCTGATATTGTC TCTCTATTACTCGGTATTTGTTCCAATATTCCGGCGCATTACCGGCCATCCTCGTGGTGCTTCTCAGCTTCAAAGAGTAGGAATCGGTCTGGCATTTTCA ATTCTTTCTGTTGCCTGGGCAGCCATTTTTGAGAGGTATCGGAGAAAGTACGCTATAGAACATGGCTATGAGTTTAGTTTCTTGACTCCCATGCCTAACC TGAGTGCCTACTGGTTGTTGATCCAGTATTGCCTGATTGGAATAGCTGAAGTCTTTTGCATTGTGGGCTTGCTTGAATTTCTGTATGAGGAAGCTCCTGA TGCAATGAAGAGTATAGGATCTGCCTATGCTGCACTAGCAGGTGGAATTGGCTGCTTTGCAGCAAGTATATTGAACAGCATTGTGAAATCAGTGACAGGG AACCCAGACAAGAGGCAGCAATCATGGTTATCCCAGAATATAAATACTGGTAGATTTGAATATTTCTACTGGCTGCTTACAGTTCTGAGTGCGATAAATT TCTGTGCCTTTCTATATTCAGCCCGTAGGTACAAGTACAGGGCAGAGCAGAAATTTGGGATTCAGGAAGTTGTAACCAACAAACAAAACACCCCAGCCAG GGGCTAG
AA sequence Show only first row Show all	>Potri.001G068600.1 pacid=42788369 polypeptide=Potri.001G068600.1.p locus=Potri.001G068600 ID=Potri.001G068600.1.v4.1 annot-version=v4.1 MGLHRGTIEVACETFTHLSSGTAARELARDMGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHGKPIPDLSKTG GWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLGISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQ GQCDQLSLLLGNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYLSVTIGAIVAFTLVVYIQMKHGWGSAFGSLA IAMGMSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGVDPSPWRLCTV TQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLPVTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFS ILSVAWAAIFERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGIGCFAASILNSIVKSVTG NPDKRQQSWLSQNINTGRFEYFYWLLTVLSAINFCAFLYSARRYKYRAEQKFGIQEVVTNKQNTPARG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13400			Major facilitator superfamily ...		Potri.001G068600 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.017G101900 [exp]	2.44	0.9099	NEMDH.3
AT4G24275			unknown protein		Potri.003G006100 [exp]	13.41	0.8502
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.008G115800 [exp]	19.49	0.8335
AT5G66530			Galactose mutarotase-like supe...		Potri.007G023200 [exp]	19.94	0.8851
AT2G42770			Peroxisomal membrane 22 kDa (M...		Potri.010G032900 [exp]	23.21	0.8780
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	24.28	0.8786
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Potri.001G420900 [exp]	26.38	0.8849
AT5G10170		ATMIPS3	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.005G078700 [exp]	26.55	0.8461	MIPS.1
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	28.42	0.8829
AT5G38610			Plant invertase/pectin methyle...		Potri.003G086600 [exp]	29.46	0.8809

Compare expression of checked genes

Potri.001G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.