Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13390 1331 / 0 NEF1 no exine formation 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G161400 [exp] 1622 / 0 AT5G13390 1340 / 0.0 no exine formation 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001797 [exp] 1442 / 0 AT5G13390 1545 / 0.0 no exine formation 1 (.1) Lus10002569 [exp] 1048 / 0 AT5G13390 1051 / 0.0 no exine formation 1 (.1) Lus10002568 [exp] 516 / 2e-172 AT5G13390 647 / 0.0 no exine formation 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G068900.1 pacid=42790344 polypeptide=Potri.001G068900.1.p locus=Potri.001G068900 ID=Potri.001G068900.1.v4.1 annot-version=v4.1 ATGATACCGCCGGAGCTCCAACCGCGGTCATTCCGCCCTTACATCGCCTCTTCCATCTCCTCCCCTTCCTTCTCCTCCTCCTTCCCCACCGCCTCTCCTT ATTCCCCCAACTCTGACTTCCCTTCCCCTTCTACCTCATCTTCTAGATCTCGTTTCTCTGCTTCTTTTTTCGCTCACAACACTCGCATCGCCCTCGCCCT CGCTCCCTGCGCTGCTTTCCTCCTTGACCTCGGTGGAGCTCCCGTAGTCGCAATCCTAACCCTGGGTTTGATGATTGCTTACATCATCGACTCACTCAAT TTCAAATCCGGTGCGTTTTTCTGTGTCTGGGCTTCCCTAATTGCAGCTCAGATCGCCTTCTTTTTTAGCTCCTCATTGATATTCACTTTCAATTCGATCC CTCTTGGTTTGCTCGCTGCGTTCCTCTGTGCACAAACGAATTTCTTAATCGGGGCTTGGGCTTCACTTCAGTTCAAATGGATTCAATTAGAAAACCCTAC TATCGTGCTCGCGCTTGAACGTTTGTTATTCGCATGTGTTCCTTTCGCTGCTTCTTCGATATTCACTTGGGCTACAATCTCTGCTGTCGGTATGCAAAAT GCTGCGTATTATCTGATGATTTTTAGTTGTGTCTTCTATTGGATGTTTGCAATTCCGCGTGTTTCTTCATTTAGATCGAAACAAGAAGTGAAATATCATG GTGGAGAGGTTCCTGATGATAATTTTATACTAAGTCCACTAGAGGGTTGTTTTCATACCTTGAATTTGCTCTTCTTTCCGTTGGTATTTCATGTTGCTTC GCATTACTCGGTGATTTTCTCGTCAGCTGCGTCTGTTTGTGATTTGTTGCTGCTGTTTTTTATTCCGTTCTTGTTTCAACTGTATGCATCTACGAGGGGT GCGCTTTGGTGGGTGACTAAGAATGCGAATCAGTTGCATAGCATTCGTGTCGTGAATGGTGCTGTTGCATTGATTGTTGTCGTGATTTGTTTGGAGGTTA GAGTTGTTTTCCATTCCTTTGGAAGGTATATTCAGGTTCCTCCTCCGTTGAATTATCTGCTTGTGACCGTGACGATGCTTGGAGGGGCTGCTGGTGCTGG TGCTTCTGCCCTTGGAATGATTTCTGATGCATTTAGTTACTGGTCTTTCACTGCTTTGGCTGTAACCGTCAGTTCTGCTGGAGCAATTGTTGTGGGTTTT CCTCTACTGTTTCTTCCACTGCCTGCGATTGCTGGATTTGAATTTGCTCGTTTTGTTACAAAGAGAAGTCTGTCATCATATTTTTCCTTTGTTGTGCTCG GGAGCCTGATAGTTACATTGTTTGTGGTGCACAATTTCTGGGATCTAAATATTTGGATGGCAGGCATGTCCCTGAAATCATTCTGTAAACTTATAATCGC AAATGTTGTTCTTGCCATGGCTGTTCCAGGTTTAGCTCTTCTCCCACCTAAACTTCATTTTTTAGCTGAGATTTGTTTGATCAGCCATGCATTGCTGTTG TGCCATATTGAGAATCGGTTCTTCAATTACCCGGGATATTACTACCATGGAATGGAGGAGGATGTGATGTATCCAAGCTATATGGTTATTCTGACAACCT TTGTGGGTTTGGCTCTGGTAAGAAGACTATCTGTGGACCATCGGATTGGACCAAAGGCTGTTTGGATTTTGACTTGCCTGTATTCCTCAAAGCTGTCCAT GCTGTTTATTTCATCAAAGCCTGTTGTATGGGTTTCAGCTGTACTTTTACTGGCTGTTACTCCCCCATTGCTCCTTTACAAGGAGAAATCACGAACAGGC TCAAAGATGAAACCATGGAAAGGTTATGTACATGGTGGTGTGGTTGTTCTATCAGTCTGGCTCTTCCGTGAAACAATTTTTGAAGCCCTTCAGTGGTGGA ATGGGAGGGCTCCATCTGATGGTTTGCTTTTGGGTTTCTGCATTGCCTTGACCGGATTGGCTTGTGTACCCATTGTTGCTTTGCATTTCTCTCATGTCCT GCCGGCTAAGAGATGCCTAGTACTGGTGGTGGCAACAGGTTTACTGTTTATCCTGATGCAGCCACCAATCCCACTAGCATGGACTTATCGATCTGACATA ATCAGCGCAGCTCGTCAATCGTCTGATGACATTTCCATCTATGGCTTCATGGCATCAAAACCAACCTGGCCATCATGGTTGCTTATTGTTGCAATTCTGC TCACTCTAGCAGCGGTGACATCCATCATACCCATTAAGTACATGGTAGAGCTGAGAACATTTTTCTCCATTGCAATAGGGATTGCTCTTGGAGTATACAT TTCTGCTGAGTATTTTCTTCAAGCTGCTGTTCTGCATGCCCTCATTGTTGTAACCATGGTCTGCGCCTCTGTGTTTGTGGTCTTCACCCATTTTCCATCT GCTTCAAGCACAAAGCTGCTACCATGGGTATTCGCATTATTAGTAGCCCTCTTTCCTGTGACATATCTGTTGGAGGGTCAGTTAAGAATCAAAAGCATCC TTGGAGATGAAGTTGGAGACCTGGCGGAGGAAGACAGGAAGCTCACTACTCTACTGGCTGTTGAGGGGGCAAGAACATCACTTCTTGGTTTATATGCAGC AATCTTCATGCTCATAGCACTGGAGATTAAGTTTGAACTTGCCTCACTTATGCGGGAAAAGTCTCTTGAAAGGGTTGGAATTAGACATGGTCAATCTAGT CAAAGTAGTTCTTCAAATCTTGCTCCACGAATGAGGTTCATGCAGCAACGGCGCGCCTCTACTGTGCCAACCTTTACAATCAAGAGAATGGTTGCTGAGG GAGCTTGGATGCCCGCGGTTGGTAATGTTGCTACTATAATGTGCTTTGCTATATGCCTGATCTTGAACGTCAATCTGACTGGGGGCTCAACCCAGGCAAT CTTCTTCCTGGCTCCTATCCTGCTGCTTCTCAACCAGGACTCAGATTTTGTCGCTGGTTTTGGGGACAAACAAAGGTATTTCCCTGTTACAGTGGCCATA TCAGCCTACTTGGTCTTGACAGCTCTCTACAGCATATGGGAAGATACGTGGCATGGTAATGTTGGTTGGAGCCTTGAAATTGGTGGCCCTGATTGGTTCT TTGCAGTCAAGAATTTAGCCGTCCTCATTCTTACGTTTCCCAGCCATATACTCTTCAACCGGTTTGTTTGGAGTAACACAAAGCAGACGGACTCGTCACC ATTGATCACGCTTCCCCTTAATCTGCCATCCATTATAATATCAGATGTTATTAAGATCAGGATATTGGGATGCTTAGGGATTATTTATACCATAGCCCAG ACCATGATTTCTAGACAGCAATATATCTCAGGGATGAAGTATATTTAG
AA sequence Show only first row Show all	>Potri.001G068900.1 pacid=42790344 polypeptide=Potri.001G068900.1.p locus=Potri.001G068900 ID=Potri.001G068900.1.v4.1 annot-version=v4.1 MIPPELQPRSFRPYIASSISSPSFSSSFPTASPYSPNSDFPSPSTSSSRSRFSASFFAHNTRIALALAPCAAFLLDLGGAPVVAILTLGLMIAYIIDSLN FKSGAFFCVWASLIAAQIAFFFSSSLIFTFNSIPLGLLAAFLCAQTNFLIGAWASLQFKWIQLENPTIVLALERLLFACVPFAASSIFTWATISAVGMQN AAYYLMIFSCVFYWMFAIPRVSSFRSKQEVKYHGGEVPDDNFILSPLEGCFHTLNLLFFPLVFHVASHYSVIFSSAASVCDLLLLFFIPFLFQLYASTRG ALWWVTKNANQLHSIRVVNGAVALIVVVICLEVRVVFHSFGRYIQVPPPLNYLLVTVTMLGGAAGAGASALGMISDAFSYWSFTALAVTVSSAGAIVVGF PLLFLPLPAIAGFEFARFVTKRSLSSYFSFVVLGSLIVTLFVVHNFWDLNIWMAGMSLKSFCKLIIANVVLAMAVPGLALLPPKLHFLAEICLISHALLL CHIENRFFNYPGYYYHGMEEDVMYPSYMVILTTFVGLALVRRLSVDHRIGPKAVWILTCLYSSKLSMLFISSKPVVWVSAVLLLAVTPPLLLYKEKSRTG SKMKPWKGYVHGGVVVLSVWLFRETIFEALQWWNGRAPSDGLLLGFCIALTGLACVPIVALHFSHVLPAKRCLVLVVATGLLFILMQPPIPLAWTYRSDI ISAARQSSDDISIYGFMASKPTWPSWLLIVAILLTLAAVTSIIPIKYMVELRTFFSIAIGIALGVYISAEYFLQAAVLHALIVVTMVCASVFVVFTHFPS ASSTKLLPWVFALLVALFPVTYLLEGQLRIKSILGDEVGDLAEEDRKLTTLLAVEGARTSLLGLYAAIFMLIALEIKFELASLMREKSLERVGIRHGQSS QSSSSNLAPRMRFMQQRRASTVPTFTIKRMVAEGAWMPAVGNVATIMCFAICLILNVNLTGGSTQAIFFLAPILLLLNQDSDFVAGFGDKQRYFPVTVAI SAYLVLTALYSIWEDTWHGNVGWSLEIGGPDWFFAVKNLAVLILTFPSHILFNRFVWSNTKQTDSSPLITLPLNLPSIIISDVIKIRILGCLGIIYTIAQ TMISRQQYISGMKYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.001G068900 [exp]	0	1
AT1G54920			unknown protein		Potri.013G023600 [exp]	5.74	0.8482
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	7.41	0.8526
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	10.24	0.8186
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	10.81	0.8074
AT2G19950		GC1	golgin candidate 1 (.1.2)		Potri.018G086600 [exp]	18.43	0.8484
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Potri.011G123900 [exp]	18.86	0.8476
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	25.39	0.8261
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	26.58	0.8366
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	31.36	0.8374
AT2G27900			unknown protein		Potri.001G212600 [exp]	31.54	0.8433

Compare expression of checked genes

Potri.001G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.