Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 132 / 4e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 128 / 5e-30 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G23030 85 / 1e-16 PUB11 ARM repeat superfamily protein (.1) AT5G42340 76 / 9e-14 PUB15 Plant U-Box 15 (.1) AT3G46510 76 / 1e-13 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 67 / 4e-11 ARM repeat superfamily protein (.1.2) AT1G29340 67 / 4e-11 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT4G21350 65 / 9e-11 PUB8, B80 plant U-box 8 (.1) AT5G01830 66 / 1e-10 ARM repeat superfamily protein (.1) AT4G36550 66 / 2e-10 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175800 [exp] 264 / 1e-73 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 237 / 2e-64 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 221 / 3e-59 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 194 / 2e-50 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.005G253400 [exp] 170 / 3e-43 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 167 / 1e-42 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G024600 [exp] 165 / 9e-42 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 151 / 3e-37 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 105 / 7e-23 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005988 [exp] 229 / 5e-62 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10039402 [exp] 174 / 5e-44 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 166 / 8e-42 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 145 / 3e-35 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10034132 [exp] 143 / 1e-34 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 116 / 5e-26 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 114 / 2e-25 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 99 / 5e-21 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 92 / 1e-18 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029163 [exp] 88 / 2e-17 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G069501.2 pacid=42791076 polypeptide=Potri.001G069501.2.p locus=Potri.001G069501 ID=Potri.001G069501.2.v4.1 annot-version=v4.1 ATGGATTTCAATAATGGAATTGAGGATGTAGGGGTGGCAGTACTGCAGGAATTGTGGAACAAGGTGGCATTTCAAGCAATGGAGATCGTTACCGAAACAA GGGATGTGGTTCTTGAAAAGGACAGCTTGCAAGAATTCTCTAGAAGCATCTTAGAGCTAAGCACCCTCCTTCGGGCTTTGGACGCCAAAAGAGTTGAATC AGCAATGGGTTTAGAATCTACAAAAGCTGCATTAGAGACCTTGAATTCTCAGCTGAGAGAAGCTGCCAAGATTATCAAAGGCTACAAATCTGGGAGCTGT CTCCGTCTTTTACTTCACTCACACTCAATACGTTTGCAGATGCAAAACTTGTCGAAAGAGATGGCCATGACTATCTCCTCATTCCAGCTGGTCAATCTTG ATATGTCACTGAACCTGAAAACCATGATCAACCAGATCATCAACAATCTGAGGTCAATCGAATTCCGATCAACAGTTGCAACAGAAACATTAGCTTTTGA GATTGAAAATTCAATATCTCAGCATAGCCGAAACCAAGAGAATTCCATGAAACTTCTTGAGAAGATTGCAGAAGCTGTTGGTGCAAGAGAAAATGCATCC CTAGTGCAAAATGAGCTGGCTCTTCTGAAGCAGGAAAAGGAGGAGATGGAAGATCAAAAGAAGCAGGCGGAGGCACTTCAATTAGCTCAACTGATACAGT TGTTATACAGCACTGACATTGTTACAAGGCCGCAAAATGAGGAAATTTCTATGTACCACCAGCAATACCCAATCAACTCATTCATATGCCCACTGTGCAA TGAGATGATGACAGACCCTGTTGCAATTTTCTGTGGTCACAGCTTTGAAAGAAAGGCAATTCAGGACTGCTTCAACAGAGGAGAGAGGAATTGTCCCACC TGTGGAGAGGAGCTACAATCTTTGGAGCTCACTCCAAATGTTAATCTCCGAAGCTCTATAGATGAGTGGAAGCTAAGAGACTTGAACTTAAAATTTCAAG CTGCAGTCTCAGGAATCAATAACAATGACCATTCTCGACAAAATAAGGCCTTAGAGAACATGCAATTTCTGATGGAAATTCCCCGTTATGCAGTCAAAGT TGCAGAGGGTGGACTCGTTCCAAAATTAGTGGAATTCTTAAAGCACAAGAGACTGGACACATCGGCAACTCTGAAATGTCTTTACTACCTGGCTAAGCAC TGTGATAATCACAAGGAAGTCATGGTAGAAGCAGGTGTGGTTCGCCGCATTGTTAAGCAGATCTACAGAGGTGAAAAAGGACCAGATGCTATTGCAGTTT TGTTGGAGTTGTCCAAAAAGGAAACTCTTAGAGAAAAAATAGGGGAAACAAAAGATTGCATTCCTCTTTTGGTTTCTTTACTCCACAATGACAATCCAGA TGTGTCGCAGAAAGCCCAGAGCACGTTGCAGAATCTTTCTTCCAGCACCTCTTTTGTAATCAAGATGGCTGAAGCTGGGCATTTTCAACCGTTTGTTGCT CGTTTCAACCAAGGACCACAAGAAAGCAGAGCATTGATGGCAGCCGATTTGATAAAGATGCAACTTAAAGCAAATAACATGAAGGACTTGGAAGATGGAA AATTTATACGAAGTCTGATACAGATGCTCTCTTCAAACTCTCCAGCATACAAATCAGTATGCCTCAAATGCGTTAAGAAGCTAATGGTATACCCTCATAT TGTACAGCAGCTTCTATCAGATTCTGTGATGATACCGCCTCTTCTAGGCCTCATCTCATATGTAGGATCTGGTTCACACTTGAAACAAGAAGCTGGTGAG ATCCTTGCTCTATTGGTTGGAGCCTGTCAGCATCCTGAATTCGAGATGCATCAGGGCCTGCAGGAGCTGCAATCAGAGCACAATGTGAGCCTCTTTATGC AGTTGGTTTTCAATTCTGATCCTGAAACTAAGATTCAGTTCTTGCACCTGCTACTTGAACTTAGCTCTAAATCTCATACAGCTCAAAACCTAATCCGATC AGATCGGGATGCAATCGTTCAACTATTCGCTGCACTGGATGGTGATCAGCGTGAGGTGAAAAGATGGGTACTGAAACTCGTAAGCTGTATTTCTGATAAT CACCCTGATGGAGTTCCTCTCCCACCATCTCCTTGGAAAGAAACTGCCATCAACACTTTAGTAGCCATTCTCACTTGTTCACTGGATATTGAAGAAAGGT CCATTGCCGCTGCAATCATCGGTCAGCTTCCCAAGGATGATATCATTATTGATGAAATACTGAAGAAATCAGAAGCATTAAAAGCCATTCGTGAGGTGAT TTGCACAGAAGAGGAATATGAGGGAATCCGCGCATCTGCTAATGTAGACTCATCTCTTCTGGAGAATGCTCTAGCGGCACTTTTACATTTTACAGAGCCC ACCAAACCGGACCTTCAAAGACAAGTGGGCCAGCTTGAGGTGTATCCATCACTAGTTCGAATCCTCTCCAGTGGCAGCTCACTTTCCAAGAAGCGGACAG CCATTGCACTAGCCCATATATCCCAATCAACCAGCTCCTCAAAGCCTGAAGCAACCCTCATGGCAAAGGAACCCAAGAACTCCATGGCATTGCTACATGT GATGAACCTGTTACCCAGCATGTCCTGGTGCTGCTCAACCTCAACAGTGAACGAAGGTCTATGTGCTGTCCATGGTGATGGCTGTTCACCAAGAGACACC TTCTGCCTTGTCAAGGCAGATGCAGTGAAGCCACTTGTTAGAGCACTGAGCGAGACAGAGGATGGTGTGGCAGAGGCTGCTTTAACAGCACTTGAAACAT TGCTAACTGACCACAACACACAATCCCATGCAACTGCTGCAATTGTAGACAACCAGGGAGTGGTGGGCATTCTACAAGTTCTGGAGAAGGGAAGCTTATC GGCCAAAAGCAAAGCCCTGGATCTCTTCCAGAAAATCATAGAGCACACACAGATCAGTGAACCATTTTTTCAAAAGTCCGAGAGGATCCTCATCCAGCTT CTCCATGAAGATGTACTTAAAAAGAAAGTAGCTCTAGTGCTTAGGCAGATGAGCATCATTCCAGAGCAATCTTCATATTTCTGA
AA sequence Show only first row Show all	>Potri.001G069501.2 pacid=42791076 polypeptide=Potri.001G069501.2.p locus=Potri.001G069501 ID=Potri.001G069501.2.v4.1 annot-version=v4.1 MDFNNGIEDVGVAVLQELWNKVAFQAMEIVTETRDVVLEKDSLQEFSRSILELSTLLRALDAKRVESAMGLESTKAALETLNSQLREAAKIIKGYKSGSC LRLLLHSHSIRLQMQNLSKEMAMTISSFQLVNLDMSLNLKTMINQIINNLRSIEFRSTVATETLAFEIENSISQHSRNQENSMKLLEKIAEAVGARENAS LVQNELALLKQEKEEMEDQKKQAEALQLAQLIQLLYSTDIVTRPQNEEISMYHQQYPINSFICPLCNEMMTDPVAIFCGHSFERKAIQDCFNRGERNCPT CGEELQSLELTPNVNLRSSIDEWKLRDLNLKFQAAVSGINNNDHSRQNKALENMQFLMEIPRYAVKVAEGGLVPKLVEFLKHKRLDTSATLKCLYYLAKH CDNHKEVMVEAGVVRRIVKQIYRGEKGPDAIAVLLELSKKETLREKIGETKDCIPLLVSLLHNDNPDVSQKAQSTLQNLSSSTSFVIKMAEAGHFQPFVA RFNQGPQESRALMAADLIKMQLKANNMKDLEDGKFIRSLIQMLSSNSPAYKSVCLKCVKKLMVYPHIVQQLLSDSVMIPPLLGLISYVGSGSHLKQEAGE ILALLVGACQHPEFEMHQGLQELQSEHNVSLFMQLVFNSDPETKIQFLHLLLELSSKSHTAQNLIRSDRDAIVQLFAALDGDQREVKRWVLKLVSCISDN HPDGVPLPPSPWKETAINTLVAILTCSLDIEERSIAAAIIGQLPKDDIIIDEILKKSEALKAIREVICTEEEYEGIRASANVDSSLLENALAALLHFTEP TKPDLQRQVGQLEVYPSLVRILSSGSSLSKKRTAIALAHISQSTSSSKPEATLMAKEPKNSMALLHVMNLLPSMSWCCSTSTVNEGLCAVHGDGCSPRDT FCLVKADAVKPLVRALSETEDGVAEAALTALETLLTDHNTQSHATAAIVDNQGVVGILQVLEKGSLSAKSKALDLFQKIIEHTQISEPFFQKSERILIQL LHEDVLKKKVALVLRQMSIIPEQSSYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68940			Armadillo/beta-catenin-like re...		Potri.001G069501 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	4.69	0.9321
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029201 [exp]	5.91	0.9192
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027501 [exp]	10.00	0.9210
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	10.95	0.9187
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	11.57	0.9240
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	25.90	0.9136
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	26.53	0.9146
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	30.16	0.9144
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G065300 [exp]	30.39	0.8991
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	36.33	0.8826

Compare expression of checked genes

Potri.001G069501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.