Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) AT5G41060 404 / 4e-139 DHHC-type zinc finger family protein (.1.2) AT3G48760 390 / 2e-132 DHHC-type zinc finger family protein (.1) AT4G24630 375 / 8e-128 DHHC-type zinc finger family protein (.1) AT5G50020 363 / 3e-122 DHHC-type zinc finger family protein (.1.2) AT3G56930 349 / 2e-116 DHHC-type zinc finger family protein (.1.2) AT5G05070 320 / 4e-106 DHHC-type zinc finger family protein (.1) AT2G40990 302 / 5e-99 DHHC-type zinc finger family protein (.1) AT3G56920 298 / 2e-98 DHHC-type zinc finger family protein (.1) AT3G51390 90 / 1e-19 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160600 [exp] 798 / 0 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 442 / 2e-153 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 437 / 2e-151 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 416 / 9e-143 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 401 / 6e-137 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 389 / 5e-133 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 372 / 3e-126 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 350 / 3e-116 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.007G077000 [exp] 344 / 3e-116 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035177 [exp] 436 / 6e-151 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 431 / 5e-149 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 380 / 5e-129 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 380 / 1e-128 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 379 / 3e-128 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 374 / 1e-125 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 336 / 1e-111 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10033527 [exp] 327 / 2e-109 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 325 / 2e-108 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10038990 [exp] 308 / 3e-101 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G070100.2 pacid=42791072 polypeptide=Potri.001G070100.2.p locus=Potri.001G070100 ID=Potri.001G070100.2.v4.1 annot-version=v4.1 ATGGGGGGCGTTGAGAGAATGCGAGGAGGAAGTGGAGGAGAAAAAATGTACAACACGTCAACTCCAATGCCTACGCATCAACTTTCCGATTCTAATCGCC GAATTATGGGTAGCCATAACGATAATAGAGCTCGTAATCTTCGAGTCTATCAAGCTTGGAAAGGCAACAATATATTCTGCCTTGGGGGTAGACTAGTTTT TGGTCCAGATGTCAGGTCGCTATTCCTTACAATCCTTCTAATCATGATTCCAGTAGTCTTATTTTCCGCTTTTGTTTCTCGAAGGCTCATTGAAGACTTC CAACACCAGCTAGGTGATTATATTGTAGTTATATGTGCCGTCTTGACAGCATACGTTATTATTCTTCTCTTCCTTACTTCTGCAAGAGATCCAGGTATTA TTCCTCGTAATCTCCACCCTCCAGAAGATGAAGGCTCAAGTATATCTGCTGATTGGCCAGGAAGTCAGGTTTCTGGCCCAAGTTTACCTCCCACAAAAGA TGTTATGGTGAATGGGATGGTAGTCAAGGTCAAATACTGCCAAACGTGCATGCTATACCGCTCACCAAGATGCTCTCACTGCTCTATATGCAACAACTGC GTTGAGCGTTTTGATCATCATTGCCCGTGGGTGGGGCAATGTATTGGCAAGAGGAATTACAGATTCTTTTTCATGTTTGTGTCTTCCACAACTATTCTAT GCCTCTATGTTCTTGCATTCTGCTGGGTCAACATCAGGAAGATAATGGATACAGATCATTGTGATATATGGAGGGCCTTTCTGAAGTCTCCTGTTTCAGG AATCCTGGTATTATACACATTTATATGTGCTTGGTTTGTTGGAGGCCTCACTGCATTTCATCTGTACTTGATATGCACCAATCAGACAACATATGAGAAC TTCAGGTATAGGTATGATGGAAAGATGAATCCTTACAACCTTGGTTGTGTTCGTAATGTTCTGGAGGTTTTCTTCACAAAAATTCCAAAATCGAAGAACA AGTTCCGTGCAAAGGTTCTGGTTGATTCATCTTCTGGCTATGCTGCTTCAATGCCGATGAGCCATGTCTTGAGCCCGGAGGTGCCCAAAAGGAGCTTTGA TATAGAAGTGGGGAAACGACAAGCTGTTGCTGATGAGGATTTTGAAGATTTACAAAGTCAGATTGATAGTATTGGTGGATTGGAGAGGTGTGGAACCCAG CCAAGACACGCAAATTGGGATCATAAAGCCAACTGGGAGATAACACCAGATATACAGGTGTTGGCTGCTGAGTTTGGAATGGAACCTGGTTTGGCAGATG GGCAGAAAATTTCTCGTGATCATTGA
AA sequence Show only first row Show all	>Potri.001G070100.2 pacid=42791072 polypeptide=Potri.001G070100.2.p locus=Potri.001G070100 ID=Potri.001G070100.2.v4.1 annot-version=v4.1 MGGVERMRGGSGGEKMYNTSTPMPTHQLSDSNRRIMGSHNDNRARNLRVYQAWKGNNIFCLGGRLVFGPDVRSLFLTILLIMIPVVLFSAFVSRRLIEDF QHQLGDYIVVICAVLTAYVIILLFLTSARDPGIIPRNLHPPEDEGSSISADWPGSQVSGPSLPPTKDVMVNGMVVKVKYCQTCMLYRSPRCSHCSICNNC VERFDHHCPWVGQCIGKRNYRFFFMFVSSTTILCLYVLAFCWVNIRKIMDTDHCDIWRAFLKSPVSGILVLYTFICAWFVGGLTAFHLYLICTNQTTYEN FRYRYDGKMNPYNLGCVRNVLEVFFTKIPKSKNKFRAKVLVDSSSGYAASMPMSHVLSPEVPKRSFDIEVGKRQAVADEDFEDLQSQIDSIGGLERCGTQ PRHANWDHKANWEITPDIQVLAAEFGMEPGLADGQKISRDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26935			DHHC-type zinc finger family p...		Potri.001G070100 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.004G159800 [exp]	4.47	0.8386	GAL1.4
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	4.89	0.8446
AT1G12210		RFL1	RPS5-like 1 (.1)		Potri.001G443932 [exp]	6.63	0.8360
AT4G25835			P-loop containing nucleoside t...		Potri.009G024400 [exp]	6.70	0.8388
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.010G095500 [exp]	9.59	0.8780
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Potri.004G147200 [exp]	10.95	0.7860
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.008G013400 [exp]	13.71	0.8630
AT3G27027			Protein of unknown function (D...		Potri.017G064972 [exp]	14.49	0.8727
AT2G28150			Domain of unknown function (DU...		Potri.004G216200 [exp]	14.49	0.8219
AT3G49810			ARM repeat superfamily protein...		Potri.006G277700 [exp]	18.70	0.8176

Compare expression of checked genes

Potri.001G070100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.