Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61790 580 / 0 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 573 / 0 Calreticulin family protein (.1.2) AT1G09210 167 / 2e-46 AtCRT1b calreticulin 1b (.1) AT1G56340 162 / 9e-45 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G08450 135 / 1e-34 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109200 [exp] 587 / 0 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 580 / 0 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.013G009500 [exp] 155 / 5e-42 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.005G015100 [exp] 154 / 1e-41 AT1G56340 566 / 0.0 calreticulin 1a (.1.2) Potri.007G131500 [exp] 143 / 1e-37 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.019G055200 [exp] 142 / 2e-37 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 137 / 1e-35 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043021 [exp] 586 / 0 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 583 / 0 AT5G61790 794 / 0.0 calnexin 1 (.1) Lus10010924 [exp] 170 / 1e-46 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 158 / 2e-42 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 156 / 3e-41 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 154 / 3e-41 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 148 / 5e-39 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10026849 [exp] 147 / 5e-38 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00262 [poplar] [flax] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Potri.001G070600.1 pacid=42789541 polypeptide=Potri.001G070601.1.p locus=Potri.001G070600 ID=Potri.001G070600.1.v4.1 annot-version=v4.1 ATGGAAAGGAGCTGGAAGCTGATTCCTCAGCTTCTGCTGATTGCTTGCTTTGTCTTTCAGATCTGCGCCAGTTATGATGATGTGATGTTTTATGAGCCAT TTGATGAATCTTTTGAAGGAAAGTGGATTTTCTCTGAGAAAGATTACTATCAAGGTGTCTGGAAGCTCTCGAAAAGCGAGGGACACGATGATTATGGACT TCTTGTCAGTGAGAAGGCCAAAAGGTATGCCATTGTGAAAGAGCTAGACAGTGTATTTAGTCTCAATGATGGAACAGTTGTCCTACAGTTTGAGGTTCGG CTGCAAAATGGACTTGAGTGTGGTGGTGCCTACTTGAAGTACCTCCGTCCCCAGGAGGTTGGATGGAAACCCAAGGAATTCGATAATGAAGCACCATCTC AAGCACCCCCTTCAGTGCCATCTGACAAATTCTCCCATGTCTATACTGCAATATTGAAACCAGATAATGAATTGAAGATTATAATAGATGGAGAGGAGAA GAAGAAGGCAAATTTCCTATCTGCAGAAGATTTTGAGCCTGCTCTTATTCCACCCAAGACAATTCCTGATCCAGATGACAGGAAACCAGAGGACTGGGAC GAGCGGGCAAAGATTCCAGATCCAGATGCAGTGAAGCCAGATGATTGGGATGAGGATGCACCAATGGAAATAGAAGACGAGGATGCCGTGAAACCAGAAG GGTGGTTGGATGACGAGCCTGAGGAAATTGATGATCCTGATGCTTTAAAGCCTGGAGAGTGGGATGAGGAGGAGGATGGTGAATGGGAGCCACCAAAAAA TGACAATCCTAAGTGTGAGCTAGCACCTGGCTGTGGTGAGTGGAAGAGACCGATGAAGAGAAATCCTGCTTATAAGGGAAAATGGCATGCTCCTCTAATT GACAACCCAAATTATAAGGGTATATGGAAACCTCAAGAGATCCCAAACTCTGCTTACTTTGAGCTTGAGAAACCTGATTTTGAGCCTATTGCTGCAATTG GTATTGAGATTTGGAGCATGCAGGATGGCATACTCTTTGACAATATTCTGATAGCTAGTGATGAGAAGGTCGCAGACACATACAGAGAAACAACATGGAA ACCGAAGTTTGAAGTTGAGAAAGAGAAGCTGAAGGCTGAAGAAGCAACTGCTGGACATGGGATCTCCAGCTTCAAAAAGAAGATTTTTAACCTTCTCTAC AAGATAGGGGACATTCCTTTCTTAGGTGCCTATAAGCCTAAGATCATCGACCTCATTGAACAGGGAGAAAAACAGCCCAATATAAATATTGGCATCCTTG CTTCCATTGTGATTGTTATTTTCACAATTTTCTATAGAATACTATTTGGTGGCAGAAGACCAGTGGTTGATGTCCCCGAAACAAGCAGTGCTGATGCTTC TGTGACTTCAATCAACCAAGGAAGCAGTAGAGAGAGGGAACGTGAGGATGAGAATGATGATGAGAATGAGGATGAAGATGCTGCTGTGCCTCCTCGTAGG AGGGCTACAAGAAGGGAAACTTGA
AA sequence Show only first row Show all	>Potri.001G070600.1 pacid=42789541 polypeptide=Potri.001G070601.1.p locus=Potri.001G070600 ID=Potri.001G070600.1.v4.1 annot-version=v4.1 MERSWKLIPQLLLIACFVFQICASYDDVMFYEPFDESFEGKWIFSEKDYYQGVWKLSKSEGHDDYGLLVSEKAKRYAIVKELDSVFSLNDGTVVLQFEVR LQNGLECGGAYLKYLRPQEVGWKPKEFDNEAPSQAPPSVPSDKFSHVYTAILKPDNELKIIIDGEEKKKANFLSAEDFEPALIPPKTIPDPDDRKPEDWD ERAKIPDPDAVKPDDWDEDAPMEIEDEDAVKPEGWLDDEPEEIDDPDALKPGEWDEEEDGEWEPPKNDNPKCELAPGCGEWKRPMKRNPAYKGKWHAPLI DNPNYKGIWKPQEIPNSAYFELEKPDFEPIAAIGIEIWSMQDGILFDNILIASDEKVADTYRETTWKPKFEVEKEKLKAEEATAGHGISSFKKKIFNLLY KIGDIPFLGAYKPKIIDLIEQGEKQPNINIGILASIVIVIFTIFYRILFGGRRPVVDVPETSSADASVTSINQGSSREREREDENDDENEDEDAAVPPRR RATRRET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.001G070600 [exp]	0	1
AT5G05800			unknown protein		Potri.001G268908 [exp]	3.46	0.8474
AT5G01850			Protein kinase superfamily pro...		Potri.016G134900 [exp]	5.47	0.8274
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	5.65	0.8348	Pt-MKP1.2
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G119601 [exp]	6.92	0.8190
					Potri.007G048600 [exp]	7.74	0.8406
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	9.79	0.7910
AT5G46020			unknown protein		Potri.004G051100 [exp]	15.49	0.8085
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Potri.006G063300 [exp]	15.87	0.7970
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.008G129500 [exp]	16.06	0.7536
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	16.09	0.7562	Pt-WRKY22.2

Compare expression of checked genes

Potri.001G070600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.