Plant FIBer expression Database

Potri.001G070700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28190 151 / 2e-44 unknown protein
AT5G12340 100 / 2e-25 unknown protein
AT4G37240 50 / 1e-07 unknown protein
AT5G66580 45 / 7e-06 unknown protein
AT2G23690 44 / 2e-05 unknown protein
AT1G76600 44 / 3e-05 unknown protein
AT3G50800 42 / 9e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G160000
[exp]
402 / 3e-143 AT1G28190 168 / 4e-51 unknown protein
Potri.001G276400
[exp]
89 / 2e-21 AT5G12340 191 / 2e-61 unknown protein
Potri.009G071100
[exp]
82 / 8e-19 AT5G12340 187 / 4e-60 unknown protein
Potri.012G045600
[exp]
62 / 1e-11 AT1G18290 129 / 1e-38 unknown protein
Potri.015G036800
[exp]
61 / 2e-11 AT1G18290 122 / 1e-35 unknown protein
Potri.004G149600
[exp]
56 / 2e-09 AT4G37240 125 / 5e-37 unknown protein
Potri.008G127200
[exp]
53 / 2e-08 AT3G03280 127 / 2e-37 unknown protein
Potri.009G110700
[exp]
52 / 5e-08 AT5G66580 77 / 2e-18 unknown protein
Potri.009G110600
[exp]
51 / 8e-08 AT2G23690 112 / 1e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036031
[exp]
90 / 2e-21 AT5G12340 192 / 1e-61 unknown protein
Lus10009698
[exp]
55 / 8e-09 AT5G12340 109 / 1e-29 unknown protein
Lus10009561
[exp]
45 / 2e-05 AT1G06980 44 / 1e-05 unknown protein
Lus10012442
[exp]
43 / 0.0001 AT1G76600 152 / 2e-46 unknown protein
Lus10020386
[exp]
43 / 0.0001 AT1G06980 44 / 3e-05 unknown protein
Lus10010014
[exp]
42 / 0.0002 AT4G02090 127 / 2e-36 unknown protein
Lus10016785
[exp]
41 / 0.0003 AT2G23690 138 / 4e-42 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14009 DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence
>Potri.001G070700.1 pacid=42788843 polypeptide=Potri.001G070700.1.p locus=Potri.001G070700 ID=Potri.001G070700.1.v4.1 annot-version=v4.1
ATGGGTATAAGGTTCTTGAATCTGCAAATCATCCCGTGGTGTTTTCATTTGATGGGCAATCCTATATCATGCTTGCAAATCCAGTCTGAGCCACCGGCAG
GTACAATCAAGCTTATAAGATCGGATGGGCTAGTGAAGATCTATGACAGACCAATCTATGTTTCTGAGCTAATGGTAGAGTTTCCTAAACACTTGGTTTG
CCATTCAGATTCATTCTATATAGGCCAAAAGATCCCAGCTCTTTCTGAGAATGACCTGCTTCAATTAGGCCACAAGTACTTTCTTCTACCTAAACATTGC
TTCCAATCTGTGCTGTCTTTTGTCACCATAGCTTCCTTCGCCAGCTCCTCGCTACAGCCTCAGCCATCATCTTCAAGAAATGCGTTTCTAAAAAAGGCAG
CTACTTGCCAACCTTTTGATATTCTAAAATCTCCAAATGGGTGTTTGAGGATACGTGTATCAGATGAGTTTTTATCACAATTAATGGAGGAAGGTAAAGT
CAAGGAGAGTGAAGAAGATGAGAGCTCAAGAAATTGTACACCAACAAGCAGAGTTTGCACTACTCCTCAGTTAGAGAAAGATTATACGCAGCTTGTTGGG
TCACGCCAATGGAAACCAAAGTTGGAGTCAATAAGGGAGAACGAAAAGAGGAAGCTTTCTTCTTCCTTTGGAATGAAGAGAAGTAAGAAATCTCAGTCTA
AAGTGACACAAAAGAGTACTCAAGAACAACACCTTCACTCAACACCTACCAATCATAGCAAGTCTTCTCTTAAAGCCAAGATCAATATTAAATCAAGAAA
GTGA
AA sequence
>Potri.001G070700.1 pacid=42788843 polypeptide=Potri.001G070700.1.p locus=Potri.001G070700 ID=Potri.001G070700.1.v4.1 annot-version=v4.1
MGIRFLNLQIIPWCFHLMGNPISCLQIQSEPPAGTIKLIRSDGLVKIYDRPIYVSELMVEFPKHLVCHSDSFYIGQKIPALSENDLLQLGHKYFLLPKHC
FQSVLSFVTIASFASSSLQPQPSSSRNAFLKKAATCQPFDILKSPNGCLRIRVSDEFLSQLMEEGKVKESEEDESSRNCTPTSRVCTTPQLEKDYTQLVG
SRQWKPKLESIRENEKRKLSSSFGMKRSKKSQSKVTQKSTQEQHLHSTPTNHSKSSLKAKINIKSRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28190 unknown protein Potri.001G070700
[exp]
0 1
AT5G06740 Concanavalin A-like lectin pro... Potri.004G209300
[exp]
11.78 0.9864
AT1G49780 PUB26 plant U-box 26 (.1) Potri.005G063700
[exp]
16.91 0.9450
AT1G78780 pathogenesis-related family pr... Potri.005G188300
[exp]
17.20 0.9847
AT4G14746 unknown protein Potri.013G039300
[exp]
20.42 0.9839 Pt-MTN26.2
AT1G25340 MYB ATMYB116 myb domain protein 116 (.1.2) Potri.015G046200
[exp]
23.10 0.9692
AT1G68840 AP2_ERF EDF2, RAV2, RAP... TEMPRANILLO 2, RELATED TO AP2 ... Potri.003G010700
[exp]
23.91 0.9838
AT1G13260 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING ... Potri.004G219450
[exp]
26.36 0.9837
AT1G58420 Uncharacterised conserved prot... Potri.014G014500
[exp]
26.38 0.9697
Potri.006G106150
[exp]
31.96 0.9833
AT4G27290 S-locus lectin protein kinase ... Potri.001G412400
[exp]
32.86 0.9833

Potri.001G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.