Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44960 278 / 2e-94 SNARE associated Golgi protein family (.1) AT1G03260 47 / 6e-06 SNARE associated Golgi protein family (.1) AT1G12450 40 / 0.001 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159901 [exp] 173 / 2e-55 AT1G44960 152 / 2e-47 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 40 / 0.0009 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G117400 [exp] 40 / 0.001 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028709 [exp] 279 / 7e-95 AT1G44960 305 / 5e-105 SNARE associated Golgi protein family (.1) Lus10006050 [exp] 244 / 1e-81 AT1G44960 273 / 2e-93 SNARE associated Golgi protein family (.1) Lus10017913 [exp] 41 / 0.0006 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10014818 [exp] 40 / 0.0006 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.001G070800.1 pacid=42787700 polypeptide=Potri.001G070800.1.p locus=Potri.001G070800 ID=Potri.001G070800.1.v4.1 annot-version=v4.1 ATGGGTAAATGGTTGAAAGTAGCTGCTGTGATTGGGCTGATAGCTATAGCAAGAGAACTGAGCAAACAATTCGGATGGGACAAAGACGCAGCTCTTGAGC TACTTGGTGAATGGTCAGATCGATTAGGGGTTTGGGCAATGCCTGTTTACGTTGGGATTCACACAATCTCTCTCGCTCTCTGCTTGCCTTGCGCTGTTTT TTTCGAGGCTGGTGCTTCTTTGCTGTTTGGGTTCTTGCCTGCTGTTCTCTGTGTCTTCTTTGCCAAGGTCTTAGGTGCCTCTCTTTCCTTCTGGATCGGC AGGCTAGTTTTCAGGAGTTCCAGTTCAGCAATGGAGTGGGTGCAGAGTAACAAATATTTCCATCTGCTTTCCAGAGGAGTTGAAAAGGATGGATGGAAAT TTGTTCTTCTTGCACGCTTCTCACCCATGCCCTCCTATCTTATAAACTATGCTCTAGCTGCTACAAAAGTTGGGTTCATGGTTGATTTTCTGCTTCCTAC AGTTGTTGGCTGCCTCCCAATGATCCTACAGAACACATCCATTGGTAGCCTTGCTGGTGCTGCTGTTGCTTCAGCATCTGGCTCTAAAAAATCTCAGATT TGGTCTTACCTATTTCCTTTACTTGGGATTGTATCAAGTATCCTTATTTCCTTGAGGATCAAAAAGTACTCTACTGATATAACATTGGCTGAATCCTCTA CCAATGATTCTCCTCATACCTCTAGTAAAAATGGAAGCAAGGGCCTAAAGAAAAACGTCAATAAAGGACTCCTATAG
AA sequence Show only first row Show all	>Potri.001G070800.1 pacid=42787700 polypeptide=Potri.001G070800.1.p locus=Potri.001G070800 ID=Potri.001G070800.1.v4.1 annot-version=v4.1 MGKWLKVAAVIGLIAIARELSKQFGWDKDAALELLGEWSDRLGVWAMPVYVGIHTISLALCLPCAVFFEAGASLLFGFLPAVLCVFFAKVLGASLSFWIG RLVFRSSSSAMEWVQSNKYFHLLSRGVEKDGWKFVLLARFSPMPSYLINYALAATKVGFMVDFLLPTVVGCLPMILQNTSIGSLAGAAVASASGSKKSQI WSYLFPLLGIVSSILISLRIKKYSTDITLAESSTNDSPHTSSKNGSKGLKKNVNKGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44960			SNARE associated Golgi protein...		Potri.001G070800 [exp]	0	1
AT2G28060			5'-AMP-activated protein kinas...		Potri.009G008700 [exp]	8.94	0.7597
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Potri.003G171900 [exp]	9.79	0.7655
AT2G34250			SecY protein transport family ...		Potri.011G107900 [exp]	10.14	0.8014
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.001G334200 [exp]	12.24	0.7719
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.019G057300 [exp]	14.76	0.7960	Pt-MSD1.1
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.004G177500 [exp]	32.61	0.7600
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	33.16	0.7672
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.001G026700 [exp]	45.95	0.6834
AT5G47420			Tryptophan RNA-binding attenua...		Potri.003G078900 [exp]	51.39	0.7067
AT1G12390			Cornichon family protein (.1)		Potri.001G116100 [exp]	69.08	0.7345

Compare expression of checked genes

Potri.001G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.