Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47910 1227 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 1134 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 1013 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 1002 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 966 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 887 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 771 / 0 Riboflavin synthase-like superfamily protein (.1) AT1G19230 748 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 711 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 677 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159800 [exp] 1536 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 1196 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 1165 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.005G026200 [exp] 1082 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 909 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 894 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 804 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 698 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 670 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043017 [exp] 1196 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 1196 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10032517 [exp] 1185 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10029896 [exp] 1062 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 997 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10032308 [exp] 892 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 869 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 848 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 814 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 807 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01794 [poplar] [flax] Ferric_reduct Ferric reductase like transmembrane component CL0076 [poplar] [flax] FAD_Lum_binding PF08022 [poplar] [flax] FAD_binding_8 FAD-binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF08030 [poplar] [flax] NAD_binding_6 Ferric reductase NAD binding domain CL0220 [poplar] [flax] EF_hand PF08414 [poplar] [flax] NADPH_Ox Respiratory burst NADPH oxidase
Representative CDS sequence Show only first row Show all	>Potri.001G070900.1 pacid=42791999 polypeptide=Potri.001G070900.1.p locus=Potri.001G070900 ID=Potri.001G070900.1.v4.1 annot-version=v4.1 ATGATCAGAAGCGAGGGCTTGAGGGGAGCTTATTCTGAGGACAGTTCGGACACAGAAAGCATAGCAAGTGACAGAACAGCTTTTAGTGGGCCTTTAGGTT CAGGAGGAGGAGGACTTCTCAATAAAAAGCATTCTTCCAAGAAGAGCGCGGGGTTCAATATTCCTCCTGAAACCACCATAAATTCCGGCTTCACTGACGA TTCATCTTCCTTTGTAGAGATTACTTTGGATATTTGTGACGATTCTGTGGCGGTTCACAGCGTTCAGGGTGCTAATGAGGATCCCGAATTGACTTTGCTG GCGAAGACAGCGCTAGAGGGAAACAATTCCTCTTCGCTGCGGTCTTCCTTGTTTAGGAACACATCGTCCAAAATCAGGCAGGTCTCTCAGGAGCTAAAAC GTTTCGCTTCAAGAAGGTCATCCACAGCTAGACGGTTTGATAGGACTAAGTCAGCTGCTGCTCATGCCTTGAAGGGACTTAAGTTCATTACTGCTAAAAC TGGAAATGGATGGCCTGCTGTTGAGAAGCGATTTCAAGAACTTACTGCCTCTACCCATGGCCTCCTTCCATGTTCCTTGTTTGGCGAATGCATAGGTATG AACAAGGACTCTAAGGAATTTGCGAATGAATTATTTCGTGCACTTGCTCGGAGACATAACACAAATGGTGATTCAATTAACAAGGCACAGCTTAGACAGT TCTGGGATCAGATTGCTGATGAAAGCTTTGACTCTAGGCTCCAAACATTCTTTGACATGGTTGATAAAGATGCTGATGGAAGAATAACAGAAGAAGAAGT TTTGGAGATTATCAGTCTAAGTGCTTCTGCAAACAAGCTCTCCAACATTCAGAAACAAGCCAAGGAGTATGCTGCACTGATTATGGAAGAATTAGACCCA GATAATGCTGGATACATCATGATTTATAACTTGGAAACATTACTATTGCAAGCTTCAACCCAATCCGTCAGAGTTAGCGATAGCCGAGTTCTGAGTGAAT TACTTAGCCAAAAGCTGAAGCCTACACAAGAGAACAATCCATTAAAGAGATGGTACCCAAAAGTCAAGTACTTTTTGATGGATAACTGGCAGAGAGTTTG GATAATGATGTTGTGGATGGGTATCGTTGCCGGTTTATTTACTTACAAGTTCATAGAGTATCGACACAATAAGGCCGCATACGATGTAATGGGCTATTGC GTTTGTGTTGCCAAAGGAGGGGCAGAGACCCTTAAATTCAATATGGCCTTGATTTTACTACCAGTCTGCCGGAACACCATTACTTGGCTGCGAAACAAGA CCAAATTGGGAGTAGCTGTGCCTTTTGATGACAATCTAAATTTCCACAAGGTTATTGCAGTAGGAATTGCCATTGGAACTGGATTACATGCAGGGGCTCA TATAACGTGTGATTTTCCCCGACTTCTTCACGCCACTGAAAAAGAATACGAGCCTCTGAAACCTTACTTTGGAGATGAGCAACCTGATAACTACGGGTGG TTTTTGAAAGGTGTGGAGGGGATCACAGGCATTATAATGGTAGTGCTAATGGCCATAGCATTCACATTAGCCACGCCATGGTTCCGGCGTAACAGGCTCA ACCTGCCTAAACCTCTCAAGAAACTCACTGGCTTCAATGCCTTCTGGTATTCCCACCATCTGTTCGTTATTGTCTACACTCTCCTCGTGGTCCATGGAAT TTACCTCTACCTCACAAAGACATGGTATAAGAAAACGACATGGATCTACCTAGCAGTGCCGGTTATCCTTTATGCGTGTGAAAGGTTGATCAGGGCTTTT AGATCAAGCACCAGAGCTGTTAAGATTCTCAAGGTTGCCGTCTATCCTGGAAACGTCCTGGCATTGCACATGTCAAAGCCCCAGGGCTTCAAATACAAAA GTGGGCAGTACATGTTTGTCAACTGCGCTGCAGTTTCTCCATTTCAATGGCACCCATTCTCTATCACTTCTTCGCCAGGAGATGACTACCTGAGCGTGCA CATTCGAACACTCGGTGATTGGACGAGGCAACTCCAAACTGTTTTCTCTGAGGTTTGTCAGCCTCCACCTGCTGGGAAGAGTGGATTACTCAGAGCTGAT ATGCAAGGAGAAAACAATCCTAGCTTTCCGAAGATATTAATCGATGGTCCATTCGGAGCTCCAGCACAAGAGTACAAGAAATATGATGTGGTGCTACTTG TAGGGCTTGGCATTGGAGCCACACCTATGGTCAGCATTGTCAAGGACATCATCAACAACAAGAAACTTAAGGACAAGGATGGAGAGGATAATGGCGCACT AGAGGGCTTGGAAAGTGGCAGAGGACCACCCAATAAGAACAAGATTAGTACTAGCAGAAGTTTCAAAACAAGAAAAGCATATTTCTATTGGGTCACGAGG GAACAAGGTTCATTCGAGTGGTTCAAAGAGATAATGAATGAGGTGGCAGAGATGGACGACAAGCAGGTGATAGAAATGCACAACTATTGCACAAGTGTAT ATGAAGAAGGGGATGCAAGGTCTGCCCTCATTGCAATGCTCCAGTCATTAAACCATGCCAAGAATGGCGTGGATGTGGTTTCAGGCACACGGGTCAAATC CCACTTTGCCAAACCCATCTGGCGACAAGTTTACAAGAAAATCGCTCTCCGACATCCAGATGCTCGAATTGGAGTTTTCTACTGCGGGGCACCAGCACTT ACAAAGGAGCTAAGGCAACTGGCTCTAGACTTCTCTCACAAGACCTCTACGGAGTTTGATTTTCATAAAGAAAACTTTTAA
AA sequence Show only first row Show all	>Potri.001G070900.1 pacid=42791999 polypeptide=Potri.001G070900.1.p locus=Potri.001G070900 ID=Potri.001G070900.1.v4.1 annot-version=v4.1 MIRSEGLRGAYSEDSSDTESIASDRTAFSGPLGSGGGGLLNKKHSSKKSAGFNIPPETTINSGFTDDSSSFVEITLDICDDSVAVHSVQGANEDPELTLL AKTALEGNNSSSLRSSLFRNTSSKIRQVSQELKRFASRRSSTARRFDRTKSAAAHALKGLKFITAKTGNGWPAVEKRFQELTASTHGLLPCSLFGECIGM NKDSKEFANELFRALARRHNTNGDSINKAQLRQFWDQIADESFDSRLQTFFDMVDKDADGRITEEEVLEIISLSASANKLSNIQKQAKEYAALIMEELDP DNAGYIMIYNLETLLLQASTQSVRVSDSRVLSELLSQKLKPTQENNPLKRWYPKVKYFLMDNWQRVWIMMLWMGIVAGLFTYKFIEYRHNKAAYDVMGYC VCVAKGGAETLKFNMALILLPVCRNTITWLRNKTKLGVAVPFDDNLNFHKVIAVGIAIGTGLHAGAHITCDFPRLLHATEKEYEPLKPYFGDEQPDNYGW FLKGVEGITGIIMVVLMAIAFTLATPWFRRNRLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLVVHGIYLYLTKTWYKKTTWIYLAVPVILYACERLIRAF RSSTRAVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFQWHPFSITSSPGDDYLSVHIRTLGDWTRQLQTVFSEVCQPPPAGKSGLLRAD MQGENNPSFPKILIDGPFGAPAQEYKKYDVVLLVGLGIGATPMVSIVKDIINNKKLKDKDGEDNGALEGLESGRGPPNKNKISTSRSFKTRKAYFYWVTR EQGSFEWFKEIMNEVAEMDDKQVIEMHNYCTSVYEEGDARSALIAMLQSLNHAKNGVDVVSGTRVKSHFAKPIWRQVYKKIALRHPDARIGVFYCGAPAL TKELRQLALDFSHKTSTEFDFHKENF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.001G070900 [exp]	0	1
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	3.16	0.9005
AT4G35030			Protein kinase superfamily pro...		Potri.002G019300 [exp]	9.48	0.8958
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.016G066700 [exp]	11.48	0.8865	Pt-CDPK5.5,CPK19
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	11.66	0.8901
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	15.19	0.8924
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	16.97	0.9103
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.010G127600 [exp]	18.43	0.7830
AT3G04350			Plant protein of unknown funct...		Potri.002G256802 [exp]	20.59	0.9007
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.002G105000 [exp]	20.85	0.8024
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G147200 [exp]	21.63	0.8901

Compare expression of checked genes

Potri.001G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.