Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 243 / 2e-74 Plant protein of unknown function (DUF247) (.1) AT3G50170 237 / 7e-72 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 235 / 2e-71 Plant protein of unknown function (DUF247) (.1) AT3G50140 233 / 3e-70 Plant protein of unknown function (DUF247) (.1) AT3G50160 226 / 4e-68 Plant protein of unknown function (DUF247) (.1) AT3G50190 220 / 7e-66 Plant protein of unknown function (DUF247) (.1) AT3G50130 218 / 3e-64 Plant protein of unknown function (DUF247) (.1) AT3G50180 214 / 1e-62 Plant protein of unknown function (DUF247) (.1) AT5G22540 183 / 2e-52 Plant protein of unknown function (DUF247) (.1) AT3G47250 180 / 6e-51 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071400 [exp] 706 / 0 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 598 / 0 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 547 / 0 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 541 / 0 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 225 / 2e-67 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 187 / 6e-54 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 185 / 2e-53 AT4G31980 317 / 1e-101 unknown protein Potri.003G181800 [exp] 181 / 1e-51 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 176 / 4e-50 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 468 / 6e-163 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 229 / 5e-69 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 170 / 9e-48 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 164 / 1e-45 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 162 / 2e-44 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 154 / 4e-41 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 149 / 1e-39 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 149 / 1e-39 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 144 / 8e-38 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 142 / 2e-37 AT4G31980 251 / 5e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.001G071200.1 pacid=42791181 polypeptide=Potri.001G071200.1.p locus=Potri.001G071200 ID=Potri.001G071200.1.v4.1 annot-version=v4.1 ATGGCAAGTACCTTAATCAACATTAATGATGATTTGAACAAGATAGACTTTTATATGCCTAGGAATACTTCTCTGCAGAATGTTCTCTGGGACAAACGTT CAATCTACAAAATACCTGCCTCTGTTACGGCCCTCAACAGGATTGCCTACATGCCTCAGACAGTCTCCTTTGGTCCGTACCATCATGGTGAAGATCATCT GAAGCCAATGGAGGAGCACAAGCAACGAGCGCTCAGATATTATTTAAATAGATCTGGAAGACGTCTACAGGAGGTCGTTGAGTCTTTAAATGAAGAAATC CAGGTTTTAAAAGACTCATATGATATGCTTGGTGAGTCATGGAAAGATGACAAGAAAAAATTTCTGCGACTGATGATTCTTGACGGTTGTTTCATGTTGG AAATTATACGCCTTGCTACACATTCATTGGATGGCTATGCTGCCAATGATCCCATTTTTAGCAGCCACGGGAGGCTCTACATTGCACCATCTATCCGGCG TGATATGTTTTTGCTTGAAATCAACTGCCAATGCTTTATGAAAACTTCTACTTTCGCACAGGACGAAGAGTTTGTCAACGAGCTCGTGCTCAATTTCTGC TACCCCAACGCACCCGTCTCAAAGCTGGATAAAAGCTTGCATGTATTGGATTTGTACAGGAAGAGCCTGATTCTGGAAGATCCCGCCTGGAAAATGCGTC GCCCCAGGGTAAAGGGGGGTCTTCTTAATGTTGTCAATGATATTTTCCGATCAGCGACAGGGATTACTGATGTTGGAATTCAGTTCAAGAAAGGTAAAAC CAAGAGCCTGAGAGGCATCTCATTCCATGGAGGGGTACTTGAGCTTCCTGTCATTGTGGTGGATGGTGCCACCGAGGCAACCTTCCTGAATTTGATTGCC TTTGAGCGCCTCCACGTTGGTGCAGGCAATGAGGTAACATCTTATGTCTCCTTCATGGACAACATCATTCGTAATGAGAGGGACTTTGCCCTCCTACGCT CAAGAGGAATCATCCAGAATGCTATTGGAAGTCACATGGCAGCTCCTCAACTGTTCAACTCTCTCTCCAGGGACATTGCGTTTCTCCCAAACAGCAGCCT TGAAGGTGTGCACATGCAGGTCAATGCCTTCTGCAAGATGCCATGGAATGAGTGCCGTGCCAATCTCATTCACACCTATTTCAGACATCCATGGGCCATT TTGTGTGTTATTGCTGCACTCATCCTCTTTGCCCTCACTGGTGCTCAAACTGTATATTCTATAATGCCTTACTACAAATCAAATCACTCGACATCACCCT CTCCTCCTATGAGTTTCGCAGCACCCCCTCCCCTTCCAACCCCAACTCCGCCTCCTCTCACTTCTCCTATGCATCCCCCAAAACCATCACACCGGCACCA CAGATGTAGATGTGTTAAGAAGTAA
AA sequence Show only first row Show all	>Potri.001G071200.1 pacid=42791181 polypeptide=Potri.001G071200.1.p locus=Potri.001G071200 ID=Potri.001G071200.1.v4.1 annot-version=v4.1 MASTLININDDLNKIDFYMPRNTSLQNVLWDKRSIYKIPASVTALNRIAYMPQTVSFGPYHHGEDHLKPMEEHKQRALRYYLNRSGRRLQEVVESLNEEI QVLKDSYDMLGESWKDDKKKFLRLMILDGCFMLEIIRLATHSLDGYAANDPIFSSHGRLYIAPSIRRDMFLLEINCQCFMKTSTFAQDEEFVNELVLNFC YPNAPVSKLDKSLHVLDLYRKSLILEDPAWKMRRPRVKGGLLNVVNDIFRSATGITDVGIQFKKGKTKSLRGISFHGGVLELPVIVVDGATEATFLNLIA FERLHVGAGNEVTSYVSFMDNIIRNERDFALLRSRGIIQNAIGSHMAAPQLFNSLSRDIAFLPNSSLEGVHMQVNAFCKMPWNECRANLIHTYFRHPWAI LCVIAALILFALTGAQTVYSIMPYYKSNHSTSPSPPMSFAAPPPLPTPTPPPLTSPMHPPKPSHRHHRCRCVKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.001G071200 [exp]	0	1
AT1G76770			HSP20-like chaperones superfam...		Potri.005G192700 [exp]	2.00	0.9414
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	3.16	0.9538
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	4.89	0.9410	Pt-SYNC2.1
AT1G68180			RING/U-box superfamily protein...		Potri.015G127600 [exp]	5.09	0.9300
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	6.78	0.9446
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	7.93	0.9314
AT3G10680			HSP20-like chaperones superfam...		Potri.008G014000 [exp]	8.94	0.9413
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	12.68	0.9400
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	12.96	0.9335
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	13.67	0.9266

Compare expression of checked genes

Potri.001G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.