Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 293 / 8e-94 Plant protein of unknown function (DUF247) (.1) AT3G50170 278 / 8e-88 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 263 / 2e-82 Plant protein of unknown function (DUF247) (.1) AT3G50140 264 / 3e-82 Plant protein of unknown function (DUF247) (.1) AT3G50160 251 / 5e-78 Plant protein of unknown function (DUF247) (.1) AT3G50190 249 / 3e-77 Plant protein of unknown function (DUF247) (.1) AT3G50130 250 / 7e-77 Plant protein of unknown function (DUF247) (.1) AT3G50180 248 / 6e-76 Plant protein of unknown function (DUF247) (.1) AT2G36430 199 / 1e-58 Plant protein of unknown function (DUF247) (.1) AT3G47200 198 / 7e-58 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159400 [exp] 763 / 0 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 643 / 0 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.001G071400 [exp] 635 / 0 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.001G071200 [exp] 549 / 0 AT3G50120 244 / 1e-74 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 273 / 5e-86 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 220 / 8e-67 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 218 / 1e-65 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 218 / 2e-65 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 213 / 3e-64 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 538 / 0 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 275 / 8e-87 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 201 / 1e-58 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 196 / 2e-57 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 196 / 7e-57 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 194 / 1e-56 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 179 / 2e-51 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 169 / 3e-47 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 164 / 4e-45 AT4G31980 251 / 5e-76 unknown protein Lus10010064 [exp] 163 / 5e-45 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.001G071300.1 pacid=42788990 polypeptide=Potri.001G071300.1.p locus=Potri.001G071300 ID=Potri.001G071300.1.v4.1 annot-version=v4.1 ATGGAGGAAATGCAATTGCTGATTGATGTTACAGAGGAACTTCAGAATAAGGCGGATGCTTCGATGCAGAATATCCTATGGAACAAAAGATCAATCTACA AGGTACCTGCATCTGTCACAGCCCTGAACAGAGCAGCCTACAGGCCCCAAACAGTGTCCATTGGGCCTTACCATTCCTACGACGATCAGCTAAAGCCAAT GGAGGAGCACAAACACCGAGCTCTTTATTATTTTCTAAAGAGATCAGGAAAATCTCTAGAGCTATTTCTCCTATCTTTAAATGAAGTGGTGCAGGATTTA AAGGATTCGTACGATCAGCTTGATAAATCATGGAATGATGATACGGGCAAATTTCTGCAACTGATGGTTCTTGATGGCTGTTTCATGCTGGAAATTATGC GCCTTGCTATTCAACCATCGAATGACTATGCTGCTGATGATCCAGTTTTTAGCATTCATGGGAGGGTCTATGTGGCGCCATTTATCAGGCGTGATATGTT GATTGTTGAAAATCAGTTACCAATGCTTGTTCTATACAAGCTGGTTGCTACTGAAAGCGATGGGGAAAAGAATGAAGAGTTCGTCAACAAGCTCCTACTC ACCTTTTGTCACCCCAACGCGAGTGTCTCAAAGTGGGGTAAATGCTTGCATGTATTGGATTTATACAGGAAGAGCTTACTTCGGGAAGACGCCAACAGGA AAAGGCGTCACCGCAGAGTATGGGGTGGACTGCATAAAGATGTCGATGATATTGTCCGATCTGCAACAAAGATCAATGAAACTGGAATCCAGTTCAAGAA AAGTAAAACTAGAAGCCTGAAAGAAATTTCCTTCCACCATGGGGTCCTTGAGCTCCCTGTCATCGTGGTGGATGATGTAACTGAGACGCTATTTTTGAAT TTGATGGCCTTTGAGCGCTTCCATGTCGGTGCAGGAAACGAGGTCACATCTTATGTCTTCTTCATGGACAACATCATCGACAATGAGAGGGATGTTGCTC TCCTGCACTCAAGAGGGATCATCCAGAACGCTATTGGAAGTGACAAAGCTGTTGCTAAACTGTTCAACTCTCTTTCCAAGGACATTGCATTGGACCCGGA CAGCAGCCTAGAATTGGTGAACAGGCAGGTCAATGCCTACTGCAAGGAGCCTTGGAATGCCTGGCGCGCCAATCTTATCCAAACGTATTTCAGAAATCCA TGGGCCATTCTATCTCTTGTTGCTGCACTCATCCTTTTTGCGCTCACAATTGCGCAGACGGTATATAGTCTAATAGAATTTTATGAAGAAGGATCTCCAT CACCCACTCCTATGGTTTCGTCACCACCCCCTATTCCTCCTCCCACTTTTCCTCGTACGCTCTACCTAAATTTGCATGGCCGTTGA
AA sequence Show only first row Show all	>Potri.001G071300.1 pacid=42788990 polypeptide=Potri.001G071300.1.p locus=Potri.001G071300 ID=Potri.001G071300.1.v4.1 annot-version=v4.1 MEEMQLLIDVTEELQNKADASMQNILWNKRSIYKVPASVTALNRAAYRPQTVSIGPYHSYDDQLKPMEEHKHRALYYFLKRSGKSLELFLLSLNEVVQDL KDSYDQLDKSWNDDTGKFLQLMVLDGCFMLEIMRLAIQPSNDYAADDPVFSIHGRVYVAPFIRRDMLIVENQLPMLVLYKLVATESDGEKNEEFVNKLLL TFCHPNASVSKWGKCLHVLDLYRKSLLREDANRKRRHRRVWGGLHKDVDDIVRSATKINETGIQFKKSKTRSLKEISFHHGVLELPVIVVDDVTETLFLN LMAFERFHVGAGNEVTSYVFFMDNIIDNERDVALLHSRGIIQNAIGSDKAVAKLFNSLSKDIALDPDSSLELVNRQVNAYCKEPWNAWRANLIQTYFRNP WAILSLVAALILFALTIAQTVYSLIEFYEEGSPSPTPMVSSPPPIPPPTFPRTLYLNLHGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.001G071300 [exp]	0	1
					Potri.009G152101 [exp]	6.70	0.7638
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.013G040600 [exp]	14.76	0.7388
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	16.43	0.7296
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012400 [exp]	18.00	0.7286
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.017G092500 [exp]	24.16	0.7210
					Potri.014G049000 [exp]	29.34	0.7344
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	29.46	0.7235	PME2.16
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	30.46	0.7309
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	41.56	0.7173
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162600 [exp]	50.61	0.6978

Compare expression of checked genes

Potri.001G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.